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In Asian and African developing cities, decisions on transportation projects are made with capital cost constraints and administrative influences, thus, providing a well-designed public transport is not a simple task. Therefore, multi-criteria decision-making methods that can incorporate the conflicting considerations are essential. This case study introduced the application of ANP for public transportation development programs. Even though ANP is the generalization of AHP, the results of the two models were compared to see the effects of the feedback, outer and inner dependences of the elements. According to the result, ANP model give a relative importance for environmental and socio-economic benefits as a criteria of public transport development, however, the AHP model turned out to give importance for the capital cost and capacity. Providing Bus Rapid Transit and Light Rail are the chosen alternatives in the case of ANP, where as AHP model choose expanding the existing bus services.