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The vulnerability studies on urban public transportation systems have attracted growing attentions in recent years, due to their important role in the economy development of a city and the well-beings of its citizens. This paper proposes a vulnerability model of complementary urban public transportation systems (CUPTSs) composed of bus systems and subway systems, with the consideration of passengers’ intermodal transfer distance preference (PITDP) to capture different levels of complementary strength between the two systems. Based on the model, this paper further introduces a CUPTSs-aimed vulnerability analysis method from two specific aspects: (a) vulnerability effects of different PITDP values, which facilitate the design of policies to change PITDP to reduce system vulnerability; (b) vulnerability effects of different subway expansion plans, which facilitate the vulnerability investigation of current expansion …