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This paper presents methods and a clinical procedure for integrating B -mode ultrasound images tagged with position information with a planning computed tomography (CT) scan for radiotherapy. A workflow is described that allows the integration of these modalities into the clinic. A surface mapping approach provides a preregistration of the ultrasound image borders onto the patient's skin. Successively, a set of individual ultrasound images from a freehand sweep is chosen by the physician. These images are automatically registered with the planning CT scan using novel intensity-based methods. We put a particular focus on deriving an appropriate similarity measure based on the physical properties and artifacts of ultrasound. A combination of a weighted mutual information term, edge correlation, clamping to the skin surface, and occlusion detection is able to assess the alignment of structures in ultrasound …