作者
Fahad Albalawi, Abderrazak Chahid, Xingang Guo, Somayah Albaradei, Arturo Magana-Mora, Boris R Jankovic, Mahmut Uludag, Christophe Van Neste, Magbubah Essack, Taous-Meriem Laleg-Kirati, Vladimir B Bajic
发表日期
2019/8/15
期刊
Methods
卷号
166
页码范围
31-39
出版商
Academic Press
简介
Polyadenylation signals (PAS) are found in most protein-coding and some non-coding genes in eukaryotes. Their accurate recognition improves understanding gene regulation mechanisms and recognition of the 3′-end of transcribed gene regions where premature or alternate transcription ends may lead to various diseases. Although different methods and tools for in-silico prediction of genomic signals have been proposed, the correct identification of PAS in genomic DNA remains challenging due to a vast number of non-relevant hexamers identical to PAS hexamers. In this study, we developed a novel method for PAS recognition. The method is implemented in a hybrid PAS recognition model (HybPAS), which is based on deep neural networks (DNNs) and logistic regression models (LRMs). One of such models is developed for each of the 12 most frequent human PAS hexamers. DNN models appeared the …
引用总数
201920202021202220232024165632
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