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Distinguishing the autism spectrum disorder (ASD) from typical control (TC) using resting-state functional magnetic resonance imaging (rs-fMRI) is very difficult because ASD has heterogenetic properties and induce small changes in the brain structure. Moreover, distinguishing ASD from TC using the data obtained from many sites is even more difficult because many factors might negatively affect the classification model leading to unstable results. This difficulty is especially true for existing rs-fMRI analysis methods such as functional connectivity analysis. Recent studies have shown better ASD classification performance using models constructed using recurrent neural network (RNN). However, a blinded application of RNN not considering the multi-site factors is sub-optimal. In this paper, we present an artificial neural network model inspired by the existing functional connectivity analysis modeling. Our model …