作者
Peng Sun, Nora K Speicher, Richard Röttger, Jiong Guo, Jan Baumbach
发表日期
2014/5/1
期刊
Nucleic acids research
卷号
42
期号
9
页码范围
e78-e78
出版商
Oxford University Press
简介
The explosion of the biological data has dramatically reformed today's biological research. The need to integrate and analyze high-dimensional biological data on a large scale is driving the development of novel bioinformatics approaches. Biclustering, also known as ‘simultaneous clustering’ or ‘co-clustering’, has been successfully utilized to discover local patterns in gene expression data and similar biomedical data types. Here, we contribute a new heuristic: ‘Bi-Force’. It is based on the weighted bicluster editing model, to perform biclustering on arbitrary sets of biological entities, given any kind of pairwise similarities. We first evaluated the power of Bi-Force to solve dedicated bicluster editing problems by comparing Bi-Force with two existing algorithms in the BiCluE software package. We then followed a biclustering evaluation protocol in a recent review paper from Eren et al. (2013) (A comparative analysis of …
引用总数
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