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Basic concepts of molecular evolution/Anne-Mieke Vandamme--Sequence databases/Guy Bottu and Marc Van Ranst--Multiple alignment/Des Higgins--Nucleotide substitution models/Korbinian Strimmer, Arndt von Heseler and Marco Salemi--Phylogeny inference based on distance models/Yves Van de Peer and Marco Salemi--Phylogeny inference based on parsimony and maximum likelihood methods with PAUP*/Marco Salemi and Jack Sullivan--Quartet puzzling likelihood methods/Korbinian Strimmer and Arndt von Haeseler--Phylogenetic analysis using protein sequences/Fred Opperdoes--Analysis of nucleotide sequences using TreeCon/Yves Van de Peer--Selecting models of evolution/David Posada--Analysis of coding sequences/Yoshiyuki Suzuki and Takashi Gojobori--Splits Tree: a network based tool for exploring evolutionary relationships in molecular data/Vincent Moulton--Data exploration and tetrapod phylogeny/Xuhua Xia and Zheng Xie--Detecting recombination in viral sequences/Mika Salminen--LAMARC: estimating population genetic parameters from molecular data/Mary K. Kuhner.