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In remote sensing imagery, segmentation techniques fail to encounter multiple regions of interest due to challenges such as dense features, low illumination, uncertainties, and noise. Consequently, exploiting vast and redundant information makes segmentation a difficult task. Existing multilevel thresholding techniques achieve low segmentation accuracy with high temporal difficulty due to the absence of spatial information. To mitigate this issue, this paper presents a new Rényi’s entropy and modified cuckoo search-based robust automatic multi-thresholding algorithm for remote sensing image analysis. In the proposed method, the modified cuckoo search algorithm is combined with Rényi’s entropy thresholding criteria to determine optimal thresholds. In the modified cuckoo search algorithm, the Lévy flight step size was modified to improve the convergence rate. An experimental analysis was conducted to validate the proposed method, both qualitatively and quantitatively against existing metaheuristic-based thresholding methods. To do this, the performance of the proposed method was intensively examined on high-dimensional remote sensing imageries. Moreover, numerical parameter analysis is presented to compare the segmented results against the gray-level co-occurrence matrix, Otsu energy curve, minimum cross entropy, and Rényi’s entropy-based thresholding. Experiments demonstrated that the proposed approach is effective and successful in attaining accurate segmentation with low time complexity.