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The Stanford Testbed of Autonomous Rotorcraft for Multi-Agent Control (STARMAC), a fleet of quadrotor helicopters, has been developed as a testbed for novel algorithms that enable autonomous operation of aerial vehicles. This paper develops an autonomous vehicle trajectory tracking algorithm through cluttered environments for the STARMAC platform. A system relying on a single optimization must trade off the complexity of the planned path with the rate of update of the control input. In this paper, a trajectory tracking controller for quadrotor helicopters is developed to decouple the two problems. By accepting as inputs a path of waypoints and desired velocities, the control input can be updated frequently to accurately track the desired path, while the path planning occurs as a separate process on a slower timescale. To enable the use of planning algorithms that do not consider dynamic feasibility or provide …