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As cities continuously expand and with the emergence of mega-city regions, the urban functional zones (UFZs) have spread beyond their original administrative boundaries. An accurate and updated delineation of the UFZs is crucial for assessing the functional integration between cities within a mega-city region. Mobility data provides a chance to depict the UFZs from actual human activities at a finer spatial scale. Existing studies mostly adopted network-based approaches relying on the topological relationship but ignoring spatial factors, causing the lack of sensitivity in detecting the cross-cities integration of the functional region. This research proposed a novel regionalisation algorithm that redraws non-overlap boundaries of urban functional zones based on the commuting origin-destination matrix, representing the spatial interactions within cities and cross-cities. In particular, functional zones are drawn by …