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The Apache Hadoop framework is an open source implementation of MapReduce for processing and storing big data. However, to get the best performance from this is a big challenge because of its large number configuration parameters. In this paper, the concept of critical issues of Hadoop system, big data and machine learning have been highlighted and an analysis of some machine learning techniques applied so far, for improving the Hadoop performance is presented. Then, a promising machine learning technique using deep learning algorithm is proposed for Hadoop system performance improvement.