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Seasonal rivers are the main sources of discharge for many lakes and reservoirs. These rivers can deliver pollutants into these water bodies, especially during large events. The fate and distribution of these pollutants within lakes is difficult to predict. Here, a three-dimensional, finite-volume model for predicting lake water quality is used to account for internal advection and diffusion, including the impacts of the inflowing rivers on the velocity field. We used parsimonious sub-models for the source/sink terms for temperature, dissolved oxygen, ammonia nitrogen, phosphorous, phytoplankton, and zooplankton concentrations and tested the model predictions against field measurements from the Chahnimeh Reservoir in Iran. The modeled water quality parameters were in good agreement with the measured values. Results were notably poorer when the three-dimensionality of the model was removed. This study …