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SeekDeep: single-base resolution de novo clustering for amplicon deep sequencing NJ Hathaway, CM Parobek, JJ Juliano, JA Bailey Nucleic acids research 46 (4), e21-e21, 2017 | 120 | 2017 |
Plasmodium falciparum is evolving to escape malaria rapid diagnostic tests in Ethiopia SM Feleke, EN Reichert, H Mohammed, BG Brhane, K Mekete, H Mamo, ... Nature microbiology 6 (10), 1289-1299, 2021 | 108 | 2021 |
Drug-Resistance and Population Structure of Plasmodium falciparum Across the Democratic Republic of Congo Using High-Throughput Molecular Inversion Probes O Aydemir, M Janko, NJ Hathaway, R Verity, MK Mwandagalirwa, ... The Journal of infectious diseases 218 (6), 946-955, 2018 | 105 | 2018 |
Using Amplicon Deep Sequencing to Detect Genetic Signatures of Plasmodium vivax Relapse JT Lin, NJ Hathaway, DL Saunders, C Lon, S Balasubramanian, ... The Journal of infectious diseases 212 (6), 999-1008, 2015 | 84 | 2015 |
The impact of antimalarial resistance on the genetic structure of Plasmodium falciparum in the DRC R Verity, O Aydemir, NF Brazeau, OJ Watson, NJ Hathaway, ... Nature communications 11 (1), 2107, 2020 | 83 | 2020 |
Sex-based differences in clearance of chronic Plasmodium falciparum infection J Briggs, N Teyssier, JI Nankabirwa, J Rek, P Jagannathan, E Arinaitwe, ... Elife 9, e59872, 2020 | 71 | 2020 |
A novel CRISPR-based malaria diagnostic capable of Plasmodium detection, species differentiation, and drug-resistance genotyping CH Cunningham, CM Hennelly, JT Lin, R Ubalee, RM Boyce, EM Mulogo, ... EBioMedicine 68, 2021 | 64 | 2021 |
Sensitive, Highly Multiplexed Sequencing of Microhaplotypes From the Plasmodium falciparum Heterozygome SK Tessema, NJ Hathaway, NB Teyssier, M Murphy, A Chen, O Aydemir, ... The Journal of infectious diseases 225 (7), 1227-1237, 2022 | 57 | 2022 |
A deep sequencing approach to estimate Plasmodium falciparum complexity of infection (COI) and explore apical membrane antigen 1 diversity RH Miller, NJ Hathaway, O Kharabora, K Mwandagalirwa, A Tshefu, ... Malaria journal 16 (1), 490, 2017 | 55 | 2017 |
Differing Patterns of Selection and Geospatial Genetic Diversity within Two Leading Plasmodium vivax Candidate Vaccine Antigens CM Parobek, JA Bailey, NJ Hathaway, D Socheat, WO Rogers, JJ Juliano PLoS Neglected Tropical Diseases 8 (4), e2796, 2014 | 49 | 2014 |
A deep sequencing tool for partitioning clearance rates following antimalarial treatment in polyclonal infections N Mideo, JA Bailey, NJ Hathaway, B Ngasala, DL Saunders, C Lon, ... Evolution, medicine, and public health 2016 (1), 21-36, 2016 | 47 | 2016 |
Increased risk of low birth weight in women with placental malaria associated with P. falciparum VAR2CSA clade JC Patel, NJ Hathaway, CM Parobek, KL Thwai, M Madanitsa, ... Scientific reports 7 (1), 7768, 2017 | 42 | 2017 |
Surveillance for sulfadoxine-pyrimethamine resistant malaria parasites in the Lake and Southern Zones, Tanzania, using pooling and next-generation sequencing JM Ngondi, DS Ishengoma, SM Doctor, KL Thwai, C Keeler, S Mkude, ... Malaria Journal 16, 1-7, 2017 | 39 | 2017 |
Antimalarial drug resistance profiling of Plasmodium falciparum infections in Ghana using molecular inversion probes and next-generation sequencing BA Mensah, O Aydemir, JL Myers-Hansen, M Opoku, NJ Hathaway, ... Antimicrobial agents and chemotherapy 64 (4), 10.1128/aac. 01423-19, 2020 | 27 | 2020 |
Reuse of malaria rapid diagnostic tests for amplicon deep sequencing to estimate Plasmodium falciparum transmission intensity in western Uganda RM Boyce, N Hathaway, T Fulton, R Reyes, M Matte, M Ntaro, E Mulogo, ... Scientific reports 8 (1), 10159, 2018 | 26 | 2018 |
Plasmodium falciparum genetic variation of var2csa in the Democratic Republic of the Congo R Verity, NJ Hathaway, A Waltmann, SM Doctor, OJ Watson, JC Patel, ... Malaria journal 17 (1), 46, 2018 | 19 | 2018 |
Longitudinal pooled deep sequencing of the Plasmodium vivax K12 kelch gene in Cambodia reveals a lack of selection by artemisinin NF Brazeau, N Hathaway, CM Parobek, JT Lin, JA Bailey, C Lon, ... The American Journal of Tropical Medicine and Hygiene 95 (6), 1409, 2016 | 13 | 2016 |
Characterization of triatomine bloodmeal sources using direct Sanger sequencing and amplicon deep sequencing methods S Balasubramanian, R Curtis-Robles, B Chirra, LD Auckland, A Mai, ... Scientific Reports 12 (1), 10234, 2022 | 12 | 2022 |
Targeted and whole-genome sequencing reveal a north-south divide in P. falciparum drug resistance markers and genetic structure in Mozambique C da Silva, S Boene, D Datta, E Rovira-Vallbona, A Aranda-Díaz, ... Communications Biology 6 (1), 619, 2023 | 10 | 2023 |