| Community-wide assessment of protein-interface modeling suggests improvements to design methodology SJ Fleishman, TA Whitehead, EM Strauch, JE Corn, S Qin, HX Zhou, ... Journal of molecular biology 414 (2), 289-302, 2011 | 157 | 2011 |
| gRINN: a tool for calculation of residue interaction energies and protein energy network analysis of molecular dynamics simulations O Serçinoğlu, P Ozbek Nucleic Acids Research, Web Server Issue, 2018 | 91 | 2018 |
| New Machine Learning Applications to Accelerate Personalized Medicine in Breast Cancer: Rise of the Support Vector Machines ME Ozer, PO Sarica, KY Arga OMICS: A Journal of Integrative Biology 24 (5), 241-246, 2020 | 80 | 2020 |
| DNABINDPROT: fluctuation-based predictor of DNA-binding residues within a network of interacting residues P Ozbek, S Soner, B Erman, T Haliloglu Nucleic acids research 38 (suppl 2), W417-W423, 2010 | 62 | 2010 |
| Sequence-structure-function relationships in class I MHC: a local frustration perspective O Serçinoğlu, P Ozbek PLOS ONE 15 (5), 2020 | 36 | 2020 |
| Hot spots in a network of functional sites P Ozbek, S Soner, T Haliloglu PLOS ONE 8 (9), e74320, 2013 | 35 | 2013 |
| In Silico Tools and Approaches for the Prediction of Functional and Structural Effects of Single-Nucleotide Polymorphisms on Proteins: An Expert Review M Yazar, P Özbek OMICS: A Journal of Integrative Biology 25 (1), 23-37, 2021 | 34 | 2021 |
| Systems biomarkers for papillary thyroid cancer prognosis and treatment through multi-omics networks G Gulfidan, M Soylu, D Demirel, HBC Erdonmez, H Beklen, PO Sarica, ... Archives of biochemistry and biophysics 715, 109085, 2022 | 22 | 2022 |
| ProSNEx: a web-based application for exploration and analysis of protein structures using network formalism RM Aydınkal, O Serçinoğlu, P Ozbek Nucleic acids research 47 (W1), W471-W476, 2019 | 18 | 2019 |
| Fracture mechanics analysis of arc shaped specimens for pipe grade polymers P Özbek, C Argyrakis, P Leevers Polymer Testing 28 (3), 357-361, 2009 | 14 | 2009 |
| In Silico Databases and Tools for Drug Repurposing O Serçinoğlu, PO Sarica In Silico Drug Design, 703-742, 2019 | 13 | 2019 |
| Computational characterization of residue couplings and micropolymorphism-induced changes in the dynamics of two differentially disease-associated human MHC class-I alleles O Serçinoğlu, P Ozbek Journal of Biomolecular Structure and Dynamics 36 (3), 724-740, 2018 | 12 | 2018 |
| DynaFace: discrimination between obligatory and non-obligatory protein-protein interactions based on the complex’s dynamics S Soner, P Ozbek, JI Garzon, N Ben-Tal, T Haliloglu PLoS computational biology 11 (10), e1004461, 2015 | 9 | 2015 |
| Epistatic Effects Between Amino Acid Insertions and Substitutions Mediate Toxin resistance of Vertebrate Na+,K+-ATPases S Mohammadi, Hİ Özdemir, P Ozbek, F Sumbul, J Stiller, Y Deng, ... Molecular Biology and Evolution 39 (12), msac258, 2022 | 8 | 2022 |
| Unraveling the Allosteric Communication Mechanisms in T-Cell Receptor–Peptide-Loaded Major Histocompatibility Complex Dynamics Using Molecular Dynamics Simulations: An Approach … EN Bingöl, O Sercinoglu, P Ozbek Journal of Chemical Information and Modeling 61 (5), 2444-2453, 2021 | 7 | 2021 |
| Dynamic characterization of HLA-B* 44 Alleles: A comparative molecular dynamics simulation study P Özbek Computational Biology and Chemistry 62 (C), 12-16, 2016 | 7 | 2016 |
| Differential interactome based drug repositioning unraveled abacavir, exemestane, nortriptyline hydrochloride, and tolcapone as potential therapeutics for colorectal cancers H Beklen, S Arslan, G Gülfidan, B TURANLI, PO Sarica, ... Frontiers in Bioinformatics, 41, 2021 | 6 | 2021 |
| Next-Generation Sequencing Identifies BRCA1 and/or BRCA2 Mutations in Women at High Hereditary Risk for Breast Cancer with Shorter Telomere Length İ Peker Eyüboğlu, G Yenmiş, EN Bingöl, Ş Yüksel, F Tokat, P Özbek, ... OMICS: A Journal of Integrative Biology 24 (1), 5-15, 2020 | 6 | 2020 |
| A review on the mechanistic details of OXA enzymes of ESKAPE pathogens FG Avci, I Tastekil, A Jaisi, P Ozbek Sarica, B Sariyar Akbulut Pathogens and Global Health 117 (3), 219-234, 2023 | 5 | 2023 |
| How Epstein-Barr virus envelope glycoprotein gp350 tricks the CR2? A molecular dynamics study EN Bingöl, I Taştekil, C Yay, N Keskin, P Ozbek Journal of Molecular Graphics and Modelling 114, 108196, 2022 | 5 | 2022 |
