COVID-19 immune features revealed by a large-scale single-cell transcriptome atlas X Ren, W Wen, X Fan, W Hou, B Su, P Cai, J Li, Y Liu, F Tang, F Zhang, ... Cell 184 (7), 1895-1913. e19, 2021 | 650 | 2021 |
Single-cell analysis of two severe COVID-19 patients reveals a monocyte-associated and tocilizumab-responding cytokine storm C Guo, B Li, H Ma, X Wang, P Cai, Q Yu, L Zhu, L Jin, C Jiang, J Fang, ... Nature communications 11 (1), 3924, 2020 | 196 | 2020 |
Single-cell profiling of the human decidual immune microenvironment in patients with recurrent pregnancy loss C Guo, P Cai, L Jin, Q Sha, Q Yu, W Zhang, C Jiang, Q Liu, D Zong, K Li, ... Cell discovery 7 (1), 1, 2021 | 97 | 2021 |
A genome-wide long noncoding RNA CRISPRi screen identifies PRANCR as a novel regulator of epidermal homeostasis P Cai, ABC Otten, B Cheng, MA Ishii, W Zhang, B Huang, K Qu, BK Sun Genome research 30 (1), 22-34, 2020 | 75 | 2020 |
Tocilizumab treatment in severe COVID-19 patients attenuates the inflammatory storm incited by monocyte centric immune interactions revealed by single-cell analysis C Guo, B Li, H Ma, X Wang, P Cai, Q Yu, L Zhu, L Jin, C Jiang, J Fang, ... BioRxiv, 2020.04. 08.029769, 2020 | 60 | 2020 |
Single-cell analysis of COVID-19, sepsis, and HIV infection reveals hyperinflammatory and immunosuppressive signatures in monocytes N Liu, C Jiang, P Cai, Z Shen, W Sun, H Xu, M Fang, X Yao, L Zhu, X Gao, ... Cell Reports 37 (1), 2021 | 39 | 2021 |
WEDGE: imputation of gene expression values from single-cell RNA-seq datasets using biased matrix decomposition Y Hu, B Li, W Zhang, N Liu, P Cai, F Chen, K Qu Briefings in Bioinformatics 22 (5), bbab085, 2021 | 24 | 2021 |
Development of double-positive thymocytes at single-cell resolution Y Li, K Li, L Zhu, B Li, D Zong, P Cai, C Jiang, P Du, J Lin, K Qu Genome Medicine 13, 1-18, 2021 | 22 | 2021 |
PIRCh-seq: functional classification of non-coding RNAs associated with distinct histone modifications J Fang, Q Ma, C Chu, B Huang, L Li, P Cai, PJ Batista, KEM Tolentino, ... Genome biology 20, 1-21, 2019 | 16 | 2019 |
APEC: an accesson-based method for single-cell chromatin accessibility analysis B Li, Y Li, K Li, L Zhu, Q Yu, P Cai, J Fang, W Zhang, P Du, C Jiang, J Lin, ... Genome biology 21, 1-27, 2020 | 11 | 2020 |
Chromatin accessibility landscapes of immune cells in rheumatoid arthritis nominate monocytes in disease pathogenesis D Zong, B Huang, Y Li, Y Lu, N Xiang, C Guo, Q Liu, Q Sha, P Du, Q Yu, ... BMC biology 19, 1-15, 2021 | 5 | 2021 |
Single-cell analysis of severe COVID-19 patients reveals a monocyte-driven inflammatory storm attenuated by Tocilizumab C Guo, B Li, H Ma, X Wang, P Cai, Q Yu, L Zhu, L Jin, C Jiang, J Fang, ... | 4 | 2020 |
Single-cell transcriptome profiling reveals immune and stromal cell heterogeneity in primary Sjögren’s syndrome N Xiang, H Xu, Z Zhou, J Wang, P Cai, L Wang, Z Tan, Y Zhou, T Zhang, ... Iscience 26 (10), 2023 | 3 | 2023 |
The long noncoding RNA PRANCR is Associated with Alternative Splicing of Fibronectin-1 in keratinocytes ABC Otten, O Amarbayar, P Cai, B Cheng, K Qu, BK Sun The Journal of investigative dermatology 143 (9), 1825, 2023 | 3 | 2023 |
The noncoding RNA PRANCR regulates splicing of Fibronectin-1 to control keratinocyte proliferation and migration ABC Otten, O Amarbayar, P Cai, B Cheng, K Qu, BK Sun bioRxiv, 2021.06. 22.449364, 2021 | 3 | 2021 |
Functional classification of noncoding RNAs associated with distinct histone modifications by PIRCh-seq J Fang, Q Ma, C Chu, B Huang, L Li, P Cai, PJ Batista, KEM Tolentino, ... bioRxiv, 667881, 2019 | 3 | 2019 |
WEDGE: recovery of gene expression values for sparse single-cell RNA-seq datasets using matrix decomposition Y Hu, B Li, N Liu, P Cai, F Chen, K Qu Brief. Bioinform. bbab085, 2021 | 2 | 2021 |
Large-scale single-cell analysis reveals critical immune characteristics of COVID-19 patients X Ren, W Wen, X Fan, W Hou, B Su, P Cai, J Li, Y Liu, F Tang, F Zhang, ... bioRxiv, 2020.10. 29.360479, 2020 | 2 | 2020 |
SMAtool reveals sequences and structural principles of protein-RNA interaction P Du, P Cai, B Huang, C Jiang, Q Wu, B Li, K Qu Biochemical and Biophysical Research Communications 525 (1), 53-56, 2020 | 1 | 2020 |
194 a CRISPR-interference screen identifies PRANCR and other novel long non-coding RNAs controlling human epidermis formation A Otten, P Cai, B Cheng, M Ishii, K Qu, B Sun Journal of Investigative Dermatology 139 (9), S248, 2019 | 1 | 2019 |