WEBnm@ v2. 0: Web server and services for comparing protein flexibility SP Tiwari, E Fuglebakk, SM Hollup, L Skjærven, T Cragnolini, ... BMC bioinformatics 15 (1), 1-12, 2014 | 117 | 2014 |
Evolution of oligomeric state through allosteric pathways that mimic ligand binding T Perica, Y Kondo, SP Tiwari, SH McLaughlin, KR Kemplen, X Zhang, ... Science 346 (6216), 1254346, 2014 | 76 | 2014 |
Comparing the intrinsic dynamics of multiple protein structures using elastic network models E Fuglebakk, SP Tiwari, N Reuter Biochimica et Biophysica Acta (BBA)-General Subjects 1850 (5), 911-922, 2015 | 75 | 2015 |
Conservation of intrinsic dynamics in proteins—what have computational models taught us? SP Tiwari, N Reuter Current opinion in structural biology 50, 75-81, 2018 | 36 | 2018 |
Integrative/hybrid modeling approaches for studying biomolecules A Srivastava, SP Tiwari, O Miyashita, F Tama Journal of molecular biology 432 (9), 2846-2860, 2020 | 28 | 2020 |
Similarity in shape dictates signature intrinsic dynamics despite no functional conservation in TIM barrel enzymes SP Tiwari, N Reuter PLoS computational biology 12 (3), e1004834, 2016 | 21 | 2016 |
Explicit versus implicit consideration of binding partners in protein–protein complex to elucidate intrinsic dynamics B Dasgupta, SP Tiwari Biophysical Reviews, 1-14, 2022 | 3 | 2022 |
Searching for 3D structural models from a library of biological shapes using a few 2D experimental images SP Tiwari, F Tama, O Miyashita BMC bioinformatics 19 (1), 320, 2018 | 3 | 2018 |
Computational Protocol for Assessing the Optimal Pixel Size to Improve the Accuracy of Single-Particle Cryo-Electron Microscopy Maps SP Tiwari, S Chhabra, F Tama, O Miyashita Journal of chemical information and modeling 60 (5), 2570-2580, 2020 | 2 | 2020 |
Protocol for Retrieving Three-Dimensional Biological Shapes for a Few XFEL Single-Particle Diffraction Patterns SP Tiwari, F Tama, O Miyashita Journal of Chemical Information and Modeling 61 (8), 4108-4119, 2021 | 1 | 2021 |
Comparing Normal Modes of Protein Structures using Webnm@ 2.0 E Fuglebakk, S Tiwari, SM Hollup, L Skjaerven, T Cragnolini, K Tekle, ... Biophysical Journal 104 (2), 228a, 2013 | 1 | 2013 |
Examining the Flexibility of Tim Barrel Proteins Based on their Structural Topology S Tiwari, N Reuter Biophysical Journal 104 (2), 227a-228a, 2013 | 1 | 2013 |
Comparing the intrinsic dynamics of multiple proteins using elastic network models reveals global similarities based on their overall shape S Tiwari, N Reuter PROTEIN SCIENCE 24, 160-160, 2015 | | 2015 |
Studying the Role of Protein Flexibility in Allosteric and Evolutionary Changes as Seen in PyrR Protein Family SP Tiwari, T Perica, Y Kondo, S McLaughlin, A Steward, J Clarke, ... Biophysical Journal 106 (2), 466a, 2014 | | 2014 |