A compendium of chromatin contact maps reveals spatially active regions in the human genome AD Schmitt, M Hu, I Jung, Z Xu, Y Qiu, CL Tan, Y Li, S Lin, Y Lin, CL Barr, ... Cell reports 17 (8), 2042-2059, 2016 | 831 | 2016 |
Multi-platform discovery of haplotype-resolved structural variation in human genomes MJP Chaisson, AD Sanders, X Zhao, A Malhotra, D Porubsky, T Rausch, ... Nature communications 10 (1), 1784, 2019 | 767 | 2019 |
RAP2 mediates mechanoresponses of the Hippo pathway Z Meng, Y Qiu, KC Lin, A Kumar, JK Placone, C Fang, KC Wang, S Lu, ... Nature 560 (7720), 655-660, 2018 | 316 | 2018 |
Transcriptionally active HERV-H retrotransposons demarcate topologically associating domains in human pluripotent stem cells Y Zhang, T Li, S Preissl, ML Amaral, JD Grinstein, EN Farah, E Destici, ... Nature genetics 51 (9), 1380-1388, 2019 | 286 | 2019 |
An atlas of dynamic chromatin landscapes in mouse fetal development DU Gorkin, I Barozzi, Y Zhao, Y Zhang, H Huang, AY Lee, B Li, J Chiou, ... Nature 583 (7818), 744-751, 2020 | 283 | 2020 |
A tiling-deletion-based genetic screen for cis-regulatory element identification in mammalian cells Y Diao, R Fang, B Li, Z Meng, J Yu, Y Qiu, KC Lin, H Huang, T Liu, ... Nature methods 14 (6), 629-635, 2017 | 264 | 2017 |
Epigenetic priming of enhancers predicts developmental competence of hESC-derived endodermal lineage intermediates A Wang, F Yue, Y Li, R Xie, T Harper, NA Patel, K Muth, J Palmer, Y Qiu, ... Cell stem cell 16 (4), 386-399, 2015 | 264 | 2015 |
Integrative analysis of haplotype-resolved epigenomes across human tissues D Leung, I Jung, N Rajagopal, A Schmitt, S Selvaraj, AY Lee, CA Yen, ... Nature 518 (7539), 350-354, 2015 | 259 | 2015 |
The Hippo pathway effector proteins YAP and TAZ have both distinct and overlapping functions in the cell SW Plouffe, KC Lin, JL Moore, FE Tan, S Ma, Z Ye, Y Qiu, B Ren, KL Guan Journal of Biological Chemistry 293 (28), 11230-11240, 2018 | 227 | 2018 |
A single-cell atlas of chromatin accessibility in the human genome K Zhang, JD Hocker, M Miller, X Hou, J Chiou, OB Poirion, Y Qiu, YE Li, ... Cell 184 (24), 5985-6001. e19, 2021 | 224 | 2021 |
Histone H3 lysine 4 monomethylation modulates long-range chromatin interactions at enhancers J Yan, SAA Chen, A Local, T Liu, Y Qiu, KM Dorighi, S Preissl, CM Rivera, ... Cell research 28 (2), 204-220, 2018 | 181 | 2018 |
Dynamic reorganization of the genome shapes the recombination landscape in meiotic prophase L Patel, R Kang, SC Rosenberg, Y Qiu, R Raviram, S Chee, R Hu, B Ren, ... Nature structural & molecular biology 26 (3), 164-174, 2019 | 139 | 2019 |
Single-cell chromatin accessibility identifies pancreatic islet cell type–and state-specific regulatory programs of diabetes risk J Chiou, C Zeng, Z Cheng, JY Han, M Schlichting, M Miller, R Mendez, ... Nature genetics 53 (4), 455-466, 2021 | 136 | 2021 |
An atlas of gene regulatory elements in adult mouse cerebrum YE Li, S Preissl, X Hou, Z Zhang, K Zhang, Y Qiu, OB Poirion, B Li, ... Nature 598 (7879), 129-136, 2021 | 126 | 2021 |
Systematic analysis of binding of transcription factors to noncoding variants J Yan, Y Qiu, AM Ribeiro dos Santos, Y Yin, YE Li, N Vinckier, N Nariai, ... Nature 591 (7848), 147-151, 2021 | 107 | 2021 |
MAPS: Model-based analysis of long-range chromatin interactions from PLAC-seq and HiChIP experiments I Juric, M Yu, A Abnousi, R Raviram, R Fang, Y Zhao, Y Zhang, Y Qiu, ... PLoS computational biology 15 (4), e1006982, 2019 | 99 | 2019 |
Human-specific tandem repeat expansion and differential gene expression during primate evolution A Sulovari, R Li, PA Audano, D Porubsky, MR Vollger, GA Logsdon, ... Proceedings of the National Academy of Sciences 116 (46), 23243-23253, 2019 | 98 | 2019 |
Pancreatic islet chromatin accessibility and conformation reveals distal enhancer networks of type 2 diabetes risk WW Greenwald, J Chiou, J Yan, Y Qiu, N Dai, A Wang, N Nariai, ... Nature communications 10 (1), 2078, 2019 | 97 | 2019 |
Common DNA sequence variation influences 3-dimensional conformation of the human genome DU Gorkin, Y Qiu, M Hu, K Fletez-Brant, T Liu, AD Schmitt, A Noor, ... Genome biology 20, 1-25, 2019 | 78 | 2019 |
Sequence logic at enhancers governs a dual mechanism of endodermal organ fate induction by FOXA pioneer factors RJ Geusz, A Wang, DK Lam, NK Vinckier, KD Alysandratos, DA Roberts, ... Nature communications 12 (1), 6636, 2021 | 43 | 2021 |