Long noncoding RNAs: past, present, and future JTY Kung, D Colognori, JT Lee Genetics 193 (3), 651-669, 2013 | 2057 | 2013 |
A comprehensive Xist interactome reveals cohesin repulsion and an RNA-directed chromosome conformation A Minajigi, JE Froberg, C Wei, H Sunwoo, B Kesner, D Colognori, ... Science 349 (6245), aab2276, 2015 | 500 | 2015 |
Single-molecule super-resolution imaging of chromosomes and in situ haplotype visualization using Oligopaint FISH probes BJ Beliveau, AN Boettiger, MS Avendaño, R Jungmann, RB McCole, ... Nature communications 6 (1), 7147, 2015 | 381 | 2015 |
Locus-specific targeting to the X chromosome revealed by the RNA interactome of CTCF JT Kung, B Kesner, JY An, JY Ahn, C Cifuentes-Rojas, D Colognori, ... Molecular cell 57 (2), 361-375, 2015 | 189 | 2015 |
Xist deletional analysis reveals an interdependency between Xist RNA and polycomb complexes for spreading along the inactive X D Colognori, H Sunwoo, AJ Kriz, CY Wang, JT Lee Molecular cell 74 (1), 101-117. e10, 2019 | 150 | 2019 |
Repeat E anchors Xist RNA to the inactive X chromosomal compartment through CDKN1A-interacting protein (CIZ1) H Sunwoo, D Colognori, JE Froberg, Y Jeon, JT Lee Proceedings of the National Academy of Sciences 114 (40), 10654-10659, 2017 | 109 | 2017 |
Human spliceosomal protein CWC22 plays a role in coupling splicing to exon junction complex deposition and nonsense-mediated decay A Alexandrov, D Colognori, MD Shu, JA Steitz Proceedings of the National Academy of Sciences 109 (52), 21313-21318, 2012 | 94 | 2012 |
Human eIF4AIII interacts with an eIF4G-like partner, NOM1, revealing an evolutionarily conserved function outside the exon junction complex A Alexandrov, D Colognori, JA Steitz Genes & development 25 (10), 1078-1090, 2011 | 72 | 2011 |
PRC1 collaborates with SMCHD1 to fold the X-chromosome and spread Xist RNA between chromosome compartments CY Wang, D Colognori, H Sunwoo, D Wang, JT Lee Nature communications 10 (1), 2950, 2019 | 70 | 2019 |
Xist RNA antagonizes the SWI/SNF chromatin remodeler BRG1 on the inactive X chromosome T Jégu, R Blum, JC Cochrane, L Yang, CY Wang, ME Gilles, D Colognori, ... Nature structural & molecular biology 26 (2), 96-109, 2019 | 61 | 2019 |
Allelic imbalance is a prevalent and tissue-specific feature of the mouse transcriptome SF Pinter, D Colognori, BJ Beliveau, RI Sadreyev, B Payer, E Yildirim, ... Genetics 200 (2), 537-549, 2015 | 53 | 2015 |
Xist repeats A and B account for two distinct phases of X inactivation establishment D Colognori, H Sunwoo, D Wang, CY Wang, JT Lee Developmental cell 54 (1), 21-32. e5, 2020 | 42 | 2020 |
Precise transcript targeting by CRISPR-Csm complexes D Colognori, M Trinidad, JA Doudna Nature biotechnology 41 (9), 1256-1264, 2023 | 36 | 2023 |
Balancing cohesin eviction and retention prevents aberrant chromosomal interactions, Polycomb-mediated repression, and X-inactivation AJ Kriz, D Colognori, H Sunwoo, B Nabet, JT Lee Molecular cell 81 (9), 1970-1987. e9, 2021 | 36 | 2021 |
Decorating chromatin for enhanced genome editing using CRISPR-Cas9 E Chen, E Lin-Shiao, M Trinidad, M Saffari Doost, D Colognori, ... Proceedings of the National Academy of Sciences 119 (49), e2204259119, 2022 | 22 | 2022 |
Genome-wide identification of autosomal genes with allelic imbalance of chromatin state AJ Savol, PI Wang, Y Jeon, D Colognori, E Yildirim, SF Pinter, B Payer, ... PloS one 12 (8), e0182568, 2017 | 9 | 2017 |
CasPEDIA Database: a functional classification system for class 2 CRISPR-Cas enzymes BA Adler, MI Trinidad, D Bellieny-Rabelo, E Zhang, HM Karp, ... Nucleic acids research 52 (D1), D590-D596, 2024 | 5 | 2024 |
Xist repeat A contributes to early recruitment of polycomb complexes during X-chromosome inactivation D Colognori, H Sunwoo, D Wang, CY Wang, JT Lee Developmental Cell 56 (9), 1236-1237, 2021 | 5 | 2021 |
Genome-wide Characterization of Diverse Bacteriophages Enabled by RNA-Binding CRISPRi BA Adler, MJ Al-Shimary, JR Patel, E Ambruster, D Colognori, EJ Charles, ... bioRxiv, 2023.09. 18.558157, 2023 | 4 | 2023 |
Dissection of Xist Functional Elements Involved in X-Chromosome Inactivation DA Colognori Harvard University, 2019 | 2 | 2019 |