| Simultaneous lineage tracing and cell-type identification using CRISPR–Cas9-induced genetic scars B Spanjaard, B Hu, N Mitic, P Olivares-Chauvet, S Janjuha, N Ninov, ... Nature biotechnology 36 (5), 469-473, 2018 | 462 | 2018 |
| Genome-wide RNA tomography in the zebrafish embryo JP Junker, ES Noel, V Guryev, KA Peterson, G Shah, J Huisken, ... Cell 159 (3), 662-675, 2014 | 303 | 2014 |
| Ascl2 acts as an R-spondin/Wnt-responsive switch to control stemness in intestinal crypts J Schuijers, JP Junker, M Mokry, P Hatzis, BK Koo, V Sasselli, ... Cell stem cell 16 (2), 158-170, 2015 | 288 | 2015 |
| Ligand-dependent equilibrium fluctuations of single calmodulin molecules JP Junker, F Ziegler, M Rief Science 323 (5914), 633-637, 2009 | 255 | 2009 |
| Every cell is special: genome-wide studies add a new dimension to single-cell biology JP Junker, A van Oudenaarden Cell 157 (1), 8-11, 2014 | 220 | 2014 |
| Single-molecule mRNA detection and counting in mammalian tissue A Lyubimova, S Itzkovitz, JP Junker, ZP Fan, X Wu, A Van Oudenaarden Nature protocols 8 (9), 1743-1758, 2013 | 211 | 2013 |
| Spatially resolved genome-wide transcriptional profiling identifies BMP signaling as essential regulator of zebrafish cardiomyocyte regeneration CC Wu, F Kruse, MD Vasudevarao, JP Junker, DC Zebrowski, K Fischer, ... Developmental cell 36 (1), 36-49, 2016 | 197 | 2016 |
| Neural-specific Sox2 input and differential Gli-binding affinity provide context and positional information in Shh-directed neural patterning KA Peterson, Y Nishi, W Ma, A Vedenko, L Shokri, X Zhang, M McFarlane, ... Genes & development 26 (24), 2802-2816, 2012 | 179 | 2012 |
| A gene regulatory program for meiotic prophase in the fetal ovary YQS Soh, JP Junker, ME Gill, JL Mueller, A van Oudenaarden, DC Page PLoS genetics 11 (9), e1005531, 2015 | 109 | 2015 |
| Tomo-Seq identifies SOX9 as a key regulator of cardiac fibrosis during ischemic injury GPA Lacraz, JP Junker, MM Gladka, B Molenaar, KT Scholman, ... Circulation 136 (15), 1396-1409, 2017 | 99 | 2017 |
| Cysteine engineering of polyproteins for single-molecule force spectroscopy H Dietz, M Bertz, M Schlierf, F Berkemeier, T Bornschlögl, JP Junker, ... Nature Protocols 1 (1), 80-84, 2006 | 97 | 2006 |
| Influence of substrate binding on the mechanical stability of mouse dihydrofolate reductase JP Junker, K Hell, M Schlierf, W Neupert, M Rief Biophysical journal 89 (5), L46-L48, 2005 | 70 | 2005 |
| Single-molecule force spectroscopy distinguishes target binding modes of calmodulin JP Junker, M Rief Proceedings of the National Academy of Sciences 106 (34), 14361-14366, 2009 | 65 | 2009 |
| Licensing of primordial germ cells for gametogenesis depends on genital ridge signaling YC Hu, PK Nicholls, YQS Soh, JR Daniele, JP Junker, ... PLoS genetics 11 (3), e1005019, 2015 | 63 | 2015 |
| Identification of molecular compartments and genetic circuitry in the developing mammalian kidney J Yu, MT Valerius, M Duah, K Staser, JK Hansard, J Guo, J McMahon, ... Development 139 (10), 1863-1873, 2012 | 63 | 2012 |
| Spatial transcriptomics of C. elegans males and hermaphrodites identifies sex-specific differences in gene expression patterns A Ebbing, Á Vértesy, MC Betist, B Spanjaard, JP Junker, E Berezikov, ... Developmental Cell 47 (6), 801-813. e6, 2018 | 60 | 2018 |
| Massively parallel whole-organism lineage tracing using CRISPR/Cas9 induced genetic scars JP Junker, B Spanjaard, J Peterson-Maduro, A Alemany, B Hu, ... Biorxiv, 056499, 2016 | 60 | 2016 |
| Tomo-seq: A method to obtain genome-wide expression data with spatial resolution F Kruse, JP Junker, A Van Oudenaarden, J Bakkers Methods in cell biology 135, 299-307, 2016 | 58 | 2016 |
| Origin and function of activated fibroblast states during zebrafish heart regeneration B Hu, S Lelek, B Spanjaard, H El-Sammak, MG Simões, J Mintcheva, ... Nature genetics 54 (8), 1227-1237, 2022 | 51 | 2022 |
| The transcriptome dynamics of single cells during the cell cycle D Schwabe, S Formichetti, JP Junker, M Falcke, N Rajewsky Molecular systems biology 16 (11), e9946, 2020 | 47 | 2020 |
