| All-optical electrophysiology in mammalian neurons using engineered microbial rhodopsins DR Hochbaum, Y Zhao, SL Farhi, N Klapoetke, CA Werley, V Kapoor, ... Nature methods 11 (8), 825-833, 2014 | 813 | 2014 |
| COVID-19 tissue atlases reveal SARS-CoV-2 pathology and cellular targets TM Delorey, CGK Ziegler, G Heimberg, R Normand, Y Yang, ... Nature 595 (7865), 107-113, 2021 | 677 | 2021 |
| Voltage imaging and optogenetics reveal behaviour-dependent changes in hippocampal dynamics Y Adam, JJ Kim, S Lou, Y Zhao, ME Xie, D Brinks, H Wu, ... Nature 569 (7756), 413-417, 2019 | 350 | 2019 |
| GABA-receptive microglia selectively sculpt developing inhibitory circuits E Favuzzi, S Huang, GA Saldi, L Binan, LA Ibrahim, M Fernández-Otero, ... Cell 184 (15), 4048-4063. e32, 2021 | 211 | 2021 |
| Single-nucleus and spatial transcriptome profiling of pancreatic cancer identifies multicellular dynamics associated with neoadjuvant treatment WL Hwang, KA Jagadeesh, JA Guo, HI Hoffman, P Yadollahpour, ... Nature genetics 54 (8), 1178-1191, 2022 | 203* | 2022 |
| Copper regulates cyclic-AMP-dependent lipolysis L Krishnamoorthy, JA Cotruvo Jr, J Chan, H Kaluarachchi, A Muchenditsi, ... Nature chemical biology 12 (8), 586-592, 2016 | 186 | 2016 |
| A bright and fast red fluorescent protein voltage indicator that reports neuronal activity in organotypic brain slices AS Abdelfattah, SL Farhi, Y Zhao, D Brinks, P Zou, A Ruangkittisakul, ... Journal of Neuroscience 36 (8), 2458-2472, 2016 | 165 | 2016 |
| MCMICRO: a scalable, modular image-processing pipeline for multiplexed tissue imaging D Schapiro, A Sokolov, C Yapp, YA Chen, JL Muhlich, J Hess, ... Nature methods 19 (3), 311-315, 2022 | 146 | 2022 |
| Pyramidal neuron subtype diversity governs microglia states in the neocortex JA Stogsdill, K Kim, L Binan, SL Farhi, JZ Levin, P Arlotta Nature 608 (7924), 750-756, 2022 | 64 | 2022 |
| MITI minimum information guidelines for highly multiplexed tissue images D Schapiro, C Yapp, A Sokolov, SM Reynolds, YA Chen, D Sudar, Y Xie, ... Nature methods 19 (3), 262-267, 2022 | 46 | 2022 |
| Wide-area all-optical neurophysiology in acute brain slices SL Farhi, VJ Parot, A Grama, M Yamagata, AS Abdelfattah, Y Adam, ... Journal of Neuroscience 39 (25), 4889-4908, 2019 | 35 | 2019 |
| Photostick: a method for selective isolation of target cells from culture MP Chien, CA Werley, SL Farhi, AE Cohen Chemical science 6 (3), 1701-1705, 2015 | 29 | 2015 |
| The 22q11. 2 region regulates presynaptic gene-products linked to schizophrenia R Nehme, O Pietiläinen, M Artomov, M Tegtmeyer, V Valakh, L Lehtonen, ... Nature Communications 13 (1), 3690, 2022 | 27 | 2022 |
| Deep unrolled recovery in sparse biological imaging: Achieving fast, accurate results YB Sahel, JP Bryan, B Cleary, SL Farhi, YC Eldar IEEE Signal Processing Magazine 39 (2), 45-57, 2022 | 19 | 2022 |
| Compressed Hadamard microscopy for high-speed optically sectioned neuronal activity recordings VJ Parot, C Sing-Long, Y Adam, UL Böhm, LZ Fan, SL Farhi, AE Cohen Journal of Physics D: Applied Physics 52 (14), 144001, 2019 | 14 | 2019 |
| Optogenetic probes for measuring membrane potential AE Cohen, D Hochbaum, P Zou, SL Farhi, RE Campbell, Y Zhao, ... US Patent 9,518,103, 2016 | 14 | 2016 |
| Astrocytic cell adhesion genes linked to schizophrenia correlate with synaptic programs in neurons O Pietiläinen, A Trehan, D Meyer, J Mitchell, M Tegtmeyer, V Valakh, ... Cell reports 42 (1), 2023 | 13 | 2023 |
| Systematic benchmarking of imaging spatial transcriptomics platforms in FFPE tissues H Wang, R Huang, J Nelson, C Gao, M Tran, A Yeaton, K Felt, KL Pfaff, ... bioRxiv, 2023 | 11 | 2023 |
| Optimization-based decoding of Imaging Spatial Transcriptomics data JP Bryan, L Binan, C McCann, YC Eldar, SL Farhi, B Cleary Bioinformatics 39 (6), btad362, 2023 | 9* | 2023 |
| Simultaneous CRISPR screening and spatial transcriptomics reveals intracellular, intercellular, and functional transcriptional circuits L Binan, S Danquah, V Valakh, B Simonton, J Bezney, R Nehme, ... Biorxiv, 2023 | 6 | 2023 |
