MEMOTE for standardized genome-scale metabolic model testing C Lieven, ME Beber, BG Olivier, FT Bergmann, M Ataman, P Babaei, ... Nature biotechnology 38 (3), 272-276, 2020 | 355 | 2020 |
The last universal common ancestor between ancient Earth chemistry and the onset of genetics MC Weiss, M Preiner, JC Xavier, V Zimorski, WF Martin PLoS genetics 14 (8), e1007518, 2018 | 179 | 2018 |
Autocatalytic chemical networks at the origin of metabolism JC Xavier, W Hordijk, S Kauffman, M Steel, WF Martin Proceedings of the Royal Society B 287 (1922), 20192377, 2020 | 142 | 2020 |
The Future of Origin of Life Research: Bridging Decades-Old Divisions M Preiner, S Asche, S Becker, HC Betts, A Boniface, E Camprubi, ... Life 10 (3), 20, 2020 | 117 | 2020 |
Integration of Biomass Formulations of Genome-Scale Metabolic Models with Experimental Data Reveals Universally Essential Cofactors in Prokaryotes JC Xavier, KR Patil, I Rocha Metabolic engineering 39, 200-208, 2017 | 95 | 2017 |
Serpentinization: Connecting Geochemistry, Ancient Metabolism and Industrial Hydrogenation M Preiner, JC Xavier, F Sousa, V Zimorski, A Neubeck, S Lang, ... Life 8 (4), 41, 2018 | 81 | 2018 |
Systems biology perspectives on minimal and simpler cells JC Xavier, KR Patil, I Rocha Microbiology and Molecular Biology Reviews 78 (3), 487-509, 2014 | 74 | 2014 |
Memote: A community driven effort towards a standardized genome-scale metabolic model test suite C Lieven, ME Beber, BG Olivier, FT Bergmann, M Ataman, P Babaei, ... BioRxiv, 350991, 2018 | 60 | 2018 |
Autocatalytic networks in biology: structural theory and algorithms M Steel, W Hordijk, JC Xavier Journal of the Royal Society Interface 16 (151), 20180808, 2019 | 49 | 2019 |
The metabolic network of the last bacterial common ancestor JC Xavier, RE Gerhards, JLE Wimmer, J Brueckner, FDK Tria, WF Martin Communications biology 4 (1), 413, 2021 | 48 | 2021 |
Catalysts, autocatalysis and the origin of metabolism M Preiner, JC Xavier, AN Vieira, K Kleinermanns, JF Allen, WF Martin Interface Focus 9 (6), 20190072, 2019 | 39 | 2019 |
Energy at origins: Favorable thermodynamics of biosynthetic reactions in the last universal common ancestor (LUCA) JLE Wimmer, JC Xavier, AN Vieira, DPH Pereira, J Leidner, FL Sousa, ... Frontiers in Microbiology 12, 793664, 2021 | 35 | 2021 |
Gene duplications trace mitochondria to the onset of eukaryote complexity FDK Tria, J Brueckner, J Skejo, JC Xavier, N Kapust, M Knopp, ... Genome Biology and Evolution 13 (5), evab055, 2021 | 31 | 2021 |
Something special about CO‐dependent CO 2 fixation JC Xavier, M Preiner, WF Martin The FEBS Journal, 2018 | 30 | 2018 |
Small-molecule autocatalytic networks are universal metabolic fossils JC Xavier, S Kauffman Philosophical Transactions of the Royal Society A 380 (2227), 20210244, 2022 | 27 | 2022 |
The Autotrophic Core: An Ancient Network of 404 Reactions Converts H2, CO2, and NH3 into Amino Acids, Bases, and Cofactors JLE Wimmer, AN Vieira, JC Xavier, K Kleinermanns, WF Martin, M Preiner Microorganisms 9 (2), 458, 2021 | 23 | 2021 |
Metabolic models and gene essentiality data reveal essential and conserved metabolism in prokaryotes JC Xavier, KR Patil, I Rocha PLOS Computational Biology 14 (11), e1006556, 2018 | 23 | 2018 |
The structure of autocatalytic networks, with application to early biochemistry M Steel, JC Xavier, DH Huson Journal of the Royal Society Interface 17 (171), 20200488, 2020 | 16 | 2020 |
Autocatalytic chemical networks preceded proteins and RNA in evolution JC Xavier, W Hordijk, S Kauffman, M Steel, WF Martin bioRxiv, 693879, 2019 | 10 | 2019 |
What Wilhelm Ostwald meant by “Autokatalyse” and its significance to origins‐of‐life research: Facilitating the search for chemical pathways underlying abiogenesis by reviving … Z Peng, K Paschek, JC Xavier BioEssays 44 (9), 2200098, 2022 | 8 | 2022 |