| Fundamental trade-offs between information flow in single cells and cellular populations R Suderman, JA Bachman, A Smith, PK Sorger, EJ Deeds Proceedings of the National Academy of Sciences 114 (22), 5755-5760, 2017 | 126 | 2017 |
| Machines vs. ensembles: effective MAPK signaling through heterogeneous sets of protein complexes R Suderman, EJ Deeds PLoS computational biology 9 (10), e1003278, 2013 | 63 | 2013 |
| PyBioNetFit and the biological property specification language ED Mitra, R Suderman, J Colvin, A Ionkov, A Hu, HM Sauro, RG Posner, ... IScience 19, 1012-1036, 2019 | 40 | 2019 |
| Preassembled GPCR signaling complexes mediate distinct cellular responses to ultralow ligand concentrations S Civciristov, AM Ellisdon, R Suderman, CK Pon, BA Evans, O Kleifeld, ... Science signaling 11 (551), eaan1188, 2018 | 40 | 2018 |
| Generalizing Gillespie’s direct method to enable network-free simulations R Suderman, ED Mitra, YT Lin, KE Erickson, S Feng, WS Hlavacek Bulletin of mathematical biology 81 (8), 2822-2848, 2019 | 21 | 2019 |
| Modeling cell line-specific recruitment of signaling proteins to the insulin-like growth factor 1 receptor KE Erickson, OS Rukhlenko, M Shahinuzzaman, KP Slavkova, YT Lin, ... PLoS computational biology 15 (1), e1006706, 2019 | 14 | 2019 |
| Intrinsic limits of information transmission in biochemical signalling motifs R Suderman, EJ Deeds Interface Focus 8 (6), 20180039, 2018 | 12 | 2018 |
| PyBioNetFit and the biological property specification language. iScience. 2019; 19: 1012–1036 ED Mitra, R Suderman, J Colvin, A Ionkov, A Hu, HM Sauro, RG Posner, ... PyBioNetFit is a tool for model parameter estimation, uncertainty …, 0 | 7 | |
| TRuML: a translator for rule-based modeling languages R Suderman, WS Hlavacek Proceedings of the 8th ACM International Conference on Bioinformatics …, 2017 | 6 | 2017 |
| Understanding the dynamics of scaffold-mediated signaling R Suderman, A Schauer, EJ Deeds bioRxiv, 167205, 2017 | 4 | 2017 |
| A step-by-step guide to using BioNetFit WS Hlavacek, JA Csicsery-Ronay, LR Baker, MC Ramos Álamo, A Ionkov, ... Modeling Biomolecular Site Dynamics: Methods and Protocols, 391-419, 2019 | 3 | 2019 |
| PyBioNetFit E Mitra, R Suderman, A Ionkov, W Hlavacek Los Alamos National Laboratory (LANL), Los Alamos, NM (United States), 2018 | 1 | 2018 |
| Modeling Biomolecular Site Dynamics WS Hlavacek, J Csicsery-Ronay, LR Baker, MDCR Álamo, A Ionkov, ... | 1 | 2018 |
| The Noise is the Signal: Information Flow in Single Cells and Cellular Populations R Suderman, J Bachman, A Smith, P Sorger, EJ Deeds 10th Annual q-bio Conference, Nashville, TN, 0 | 1 | |
| Using RuleBuilder to graphically define and visualize BioNetGen-language patterns and reaction rules R Suderman, GM Fricke, WS Hlavacek Modeling Biomolecular Site Dynamics: Methods and Protocols, 33-42, 2019 | | 2019 |
| Modeling cell activation at ultra-low ligand concentrations RT Suderman, WS Hlavacek Los Alamos National Laboratory (LANL), Los Alamos, NM (United States), 2018 | | 2018 |
| High dose of EGF ligand leads to greater EGFR degradation via Rab7 activation CC Palsuledesai, T Shideler, R Suderman, T Shi, CD Nicora, RD Smith, ... MOLECULAR BIOLOGY OF THE CELL 28, 2017 | | 2017 |
| Heterogeneity and Decision-Making in Cellular Signaling Networks R Suderman University of Kansas, 2016 | | 2016 |
| Phenotypic Properties of Scaffold-Based Signaling Paradigms R Suderman, A Schauer, EJ Deeds Biophysical Journal 108 (2), 614a, 2015 | | 2015 |
| A theoretical analysis of the potential influence of ITAM pairs on Syk recruitment dynamics R Suderman, SL Schwartz, DS Lidke, WS Hlavacek | | |
