Pathways of amyloid-β aggregation depend on oligomer shape B Barz, Q Liao, B Strodel Journal of the American Chemical Society 140 (1), 319-327, 2018 | 137 | 2018 |
Dimer formation enhances structural differences between amyloid β-protein (1–40) and (1–42): an explicit-solvent molecular dynamics study B Barz, B Urbanc PloS one 7 (4), e34345, 2012 | 137 | 2012 |
Calculating potentials of mean force and diffusion coefficients from nonequilibrium processes without Jarzynski’s equality I Kosztin, B Barz, L Janosi The Journal of chemical physics 124 (6), 2006 | 134 | 2006 |
MUFOLD: A new solution for protein 3D structure prediction J Zhang, Q Wang, B Barz, Z He, I Kosztin, Y Shang, D Xu Proteins: Structure, Function, and Bioinformatics 78 (5), 1137-1152, 2010 | 91 | 2010 |
A kinetic approach to the sequence–aggregation relationship in disease-related protein assembly B Barz, DJ Wales, B Strodel The Journal of Physical Chemistry B 118 (4), 1003-1011, 2014 | 74 | 2014 |
Early amyloid β-protein aggregation precedes conformational change B Barz, OO Olubiyi, B Strodel Chemical communications 50 (40), 5373-5375, 2014 | 66 | 2014 |
Kinetic Monte Carlo and cellular particle dynamics simulations of multicellular systems E Flenner, L Janosi, B Barz, A Neagu, G Forgacs, I Kosztin Physical Review E 85 (3), 031907, 2012 | 64 | 2012 |
Aβ42 pentamers/hexamers are the smallest detectable oligomers in solution M Wolff, B Zhang-Haagen, C Decker, B Barz, M Schneider, R Biehl, ... Scientific reports 7 (1), 2493, 2017 | 58 | 2017 |
Computational modeling of tissue self-assembly A Neagu, I Kosztin, K Jakab, B Barz, M Neagu, R Jamison, G Forgacs Modern Physics Letters B 20 (20), 1217-1231, 2006 | 47 | 2006 |
Understanding amyloid‐β oligomerization at the molecular level: the role of the fibril surface B Barz, B Strodel Chemistry–A European Journal 22 (26), 8768-8772, 2016 | 45 | 2016 |
Aβ under stress: the effects of acidosis, Cu 2+-binding, and oxidation on amyloid β-peptide dimers Q Liao, MC Owen, S Bali, B Barz, B Strodel Chemical communications 54 (56), 7766-7769, 2018 | 42 | 2018 |
Minimal model of self-assembly: Emergence of diversity and complexity B Barz, B Urbanc The Journal of Physical Chemistry B 118 (14), 3761-3770, 2014 | 36 | 2014 |
Computational modeling of epithelial–mesenchymal transformations A Neagu, V Mironov, I Kosztin, B Barz, M Neagu, RA Moreno-Rodriguez, ... Biosystems 100 (1), 23-30, 2010 | 30 | 2010 |
Fully atomistic Aβ40 and Aβ42 oligomers in water: Observation of porelike conformations MJ Voelker, B Barz, B Urbanc Journal of chemical theory and computation 13 (9), 4567-4583, 2017 | 28 | 2017 |
Conformational transitions of the Amyloid‐β peptide upon copper (II) binding and pH changes Q Liao, MC Owen, OO Olubiyi, B Barz, B Strodel Israel journal of chemistry 57 (7-8), 771-784, 2017 | 23 | 2017 |
Folding of pig gastric mucin non-glycosylated domains: a discrete molecular dynamics study B Barz, BS Turner, R Bansil, B Urbanc Journal of biological physics 38, 681-703, 2012 | 23 | 2012 |
Molecular dynamics simulations of protein aggregation: protocols for simulation setup and analysis with Markov state models and transition networks S Samantray, W Schumann, AM Illig, M Carballo-Pacheco, A Paul, B Barz, ... Computer simulations of aggregation of proteins and peptides, 235-279, 2022 | 22 | 2022 |
Membrane curvature and surface area per lipid affect the conformation and oligomeric state of HIV-1 fusion peptide: a combined FTIR and MD simulation study B Barz, TC Wong, I Kosztin Biochimica et Biophysica Acta (BBA)-Biomembranes 1778 (4), 945-953, 2008 | 21 | 2008 |
Compact fibril-like structure of amyloid β-peptide (1–42) monomers B Barz, AK Buell, S Nath Chemical communications 57 (7), 947-950, 2021 | 17 | 2021 |
Large-scale, dynamin-like motions of the human guanylate binding protein 1 revealed by multi-resolution simulations B Barz, J Loschwitz, B Strodel PLOS Computational Biology 15 (10), e1007193, 2019 | 17 | 2019 |