A high resolution map of the Arabidopsis thaliana developmental transcriptome based on RNA‐seq profiling AV Klepikova, AS Kasianov, ES Gerasimov, MD Logacheva, AA Penin The Plant Journal 88 (6), 1058-1070, 2016 | 689 | 2016 |
Active chromatin and transcription play a key role in chromosome partitioning into topologically associating domains SV Ulianov, EE Khrameeva, AA Gavrilov, IM Flyamer, P Kos, ... Genome research 26 (1), 70-84, 2016 | 374 | 2016 |
De novo sequencing and characterization of floral transcriptome in two species of buckwheat (Fagopyrum) MD Logacheva, AS Kasianov, DV Vinogradov, TH Samigullin, ... BMC genomics 12 (1), 1-17, 2011 | 164 | 2011 |
Fast Evolution from Precast Bricks: Genomics of Young Freshwater Populations of Threespine Stickleback Gasterosteus aculeatus NV Terekhanova, MD Logacheva, AA Penin, TV Neretina, ... PLoS Genetics 10 (10), e1004696, 2014 | 150 | 2014 |
Comparative genome sequencing reveals genomic signature of extreme desiccation tolerance in the anhydrobiotic midge O Gusev, Y Suetsugu, R Cornette, T Kawashima, MD Logacheva, ... Nature communications 5 (1), 1-9, 2014 | 146 | 2014 |
Paratrypanosoma Is a Novel Early-Branching Trypanosomatid P Flegontov, J Votýpka, T Skalický, MD Logacheva, AA Penin, G Tanifuji, ... Current Biology, 2013 | 126 | 2013 |
Exploring the Limits for Reduction of Plastid Genomes: A Case Study of the Mycoheterotrophic Orchids Epipogium aphyllum and Epipogium roseum MI Schelkunov, VY Shtratnikova, MS Nuraliev, MA Selosse, AA Penin, ... Genome biology and evolution 7 (4), 1179-1191, 2015 | 124 | 2015 |
Sequencing and Analysis of Plastid Genome in Mycoheterotrophic Orchid Neottia nidus-avis MD Logacheva, MI Schelkunov, AA Penin Genome Biology and Evolution 3, 1296, 2011 | 124 | 2011 |
Selection and validation of reference genes for quantitative real-time PCR in buckwheat (Fagopyrum esculentum) based on transcriptome sequence data NV Demidenko, MD Logacheva, AA Penin PloS one 6 (5), e19434, 2011 | 120 | 2011 |
RNA-seq analysis of an apical meristem time series reveals a critical point in Arabidopsis thaliana flower initiation AV Klepikova, MD Logacheva, SE Dmitriev, AA Penin BMC Genomics 16 (466), 1-15, 2015 | 103 | 2015 |
The Plastid Genome of Mycoheterotrophic Monocot Petrosavia stellaris Exhibits Both Gene Losses and Multiple Rearrangements MD Logacheva, MI Schelkunov, MS Nuraliev, TH Samigullin, AA Penin Genome biology and evolution 6 (1), 238-246, 2014 | 85 | 2014 |
The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences EV Leushkin, RA Sutormin, ER Nabieva, AA Penin, AS Kondrashov, ... BMC Genomics 14 (1), 476, 2013 | 82 | 2013 |
Comparative chloroplast genomics and phylogenetics of Fagopyrum esculentum ssp. ancestrale–A wild ancestor of cultivated buckwheat MD Logacheva, TH Samigullin, A Dhingra, AA Penin BMC plant biology 8 (1), 59, 2008 | 82 | 2008 |
Architectural proteins Pita, Zw5, and ZIPIC contain homodimerization domain and support specific long-range interactions in Drosophila N Zolotarev, A Fedotova, O Kyrchanova, A Bonchuk, AA Penin, AS Lando, ... Nucleic acids research 44 (15), 7228-7241, 2016 | 80 | 2016 |
Transcriptome‐based phylogeny of endemic Lake Baikal amphipod species flock: fast speciation accompanied by frequent episodes of positive selection SA Naumenko, MD Logacheva, NV Popova, AV Klepikova, AA Penin, ... Molecular ecology 26 (2), 536-553, 2017 | 75 | 2017 |
The genome of Intoshia linei affirms orthonectids as highly simplified spiralians KV Mikhailov, GS Slyusarev, MA Nikitin, MD Logacheva, AA Penin, ... Current Biology 26 (13), 1768-1774, 2016 | 56 | 2016 |
Comparative analysis of plastid genomes of non-photosynthetic Ericaceae and their photosynthetic relatives MD Logacheva, MI Schelkunov, VY Shtratnikova, MV Matveeva, AA Penin Scientific Reports 6 (1), 1-14, 2016 | 52 | 2016 |
High quality genome assembly of Capsella bursa‐pastoris reveals asymmetry of regulatory elements at early stages of polyploid genome evolution AS Kasianov, AV Klepikova, IV Kulakovskiy, ES Gerasimov, AV Fedotova, ... Plant Journal, 2017 | 50 | 2017 |
Complete Plastid Genome of the Recent Holoparasite Lathraea squamaria Reveals Earliest Stages of Plastome Reduction in Orobanchaceae TH Samigullin, MD Logacheva, AA Penin, CM Vallejo-Roman PloS one 11 (3), e0150718, 2016 | 49 | 2016 |
Extraordinary genetic diversity in a wood decay mushroom MA Baranova, MD Logacheva, AA Penin, VB Seplyarskiy, YY Safonova, ... Molecular biology and evolution 32 (10), 2775-2783, 2015 | 41 | 2015 |