Immunology of COVID-19: current state of the science N Vabret, GJ Britton, C Gruber, S Hegde, J Kim, M Kuksin, R Levantovsky, ... Immunity 52 (6), 910-941, 2020 | 1862 | 2020 |
Mapping systemic inflammation and antibody responses in multisystem inflammatory syndrome in children (MIS-C) CN Gruber, RS Patel, R Trachtman, L Lepow, F Amanat, F Krammer, ... Cell 183 (4), 982-995. e14, 2020 | 564 | 2020 |
MHCflurry: open-source class I MHC binding affinity prediction TJ O'Donnell, A Rubinsteyn, M Bonsack, AB Riemer, U Laserson, ... Cell systems 7 (1), 129-132. e4, 2018 | 382 | 2018 |
Autoantigen discovery with a synthetic human peptidome HB Larman, Z Zhao, U Laserson, MZ Li, A Ciccia, MAM Gakidis, ... Nature biotechnology 29 (6), 535-541, 2011 | 354 | 2011 |
MHCflurry 2.0: improved pan-allele prediction of MHC class I-presented peptides by incorporating antigen processing TJ O’Donnell, A Rubinsteyn, U Laserson Cell systems 11 (1), 42-48. e7, 2020 | 278 | 2020 |
The effects of somatic hypermutation on neutralization and binding in the PGT121 family of broadly neutralizing HIV antibodies D Sok, U Laserson, J Laserson, Y Liu, F Vigneault, JP Julien, B Briney, ... PLoS pathogens 9 (11), e1003754, 2013 | 249 | 2013 |
Models of somatic hypermutation targeting and substitution based on synonymous mutations from high-throughput immunoglobulin sequencing data G Yaari, JA Vander Heiden, M Uduman, D Gadala-Maria, N Gupta, ... Frontiers in immunology 4, 358, 2013 | 245 | 2013 |
High-resolution antibody dynamics of vaccine-induced immune responses U Laserson, F Vigneault, D Gadala-Maria, G Yaari, M Uduman, ... Proceedings of the National Academy of Sciences 111 (13), 4928-4933, 2014 | 202 | 2014 |
Adaptive Immune Receptor Repertoire Community recommendations for sharing immune-repertoire sequencing data F Rubelt, CE Busse, SAC Bukhari, JP Bürckert, E Mariotti-Ferrandiz, ... Nature immunology 18 (12), 1274-1278, 2017 | 169 | 2017 |
Advanced analytics with spark: patterns for learning from data at scale S Ryza, U Laserson, S Owen, J Wills " O'Reilly Media, Inc.", 2017 | 145 | 2017 |
PhIP-Seq characterization of serum antibodies using oligonucleotide-encoded peptidomes D Mohan, DL Wansley, BM Sie, MS Noon, AN Baer, U Laserson, ... Nature protocols 13 (9), 1958-1978, 2018 | 138 | 2018 |
Rethinking data-intensive science using scalable analytics systems FA Nothaft, M Massie, T Danford, Z Zhang, U Laserson, C Yeksigian, ... Proceedings of the 2015 ACM SIGMOD International Conference on Management of …, 2015 | 124 | 2015 |
RAG: RNA-As-Graphs database—concepts, analysis, and features HH Gan, D Fera, J Zorn, N Shiffeldrim, M Tang, U Laserson, N Kim, ... Bioinformatics 20 (8), 1285-1291, 2004 | 122* | 2004 |
PhIP-Seq characterization of autoantibodies from patients with multiple sclerosis, type 1 diabetes and rheumatoid arthritis HB Larman, U Laserson, L Querol, K Verhaeghen, NL Solimini, GJ Xu, ... Journal of autoimmunity 43, 1-9, 2013 | 120 | 2013 |
Methods and compositions for evaluating genetic markers G Porreca, U Laserson, JB Li, ER Wassman US Patent App. 13/266,862, 2012 | 110 | 2012 |
Two classes of broadly neutralizing antibodies within a single lineage directed to the high-mannose patch of HIV envelope KJ Doores, L Kong, SA Krumm, KM Le, D Sok, U Laserson, F Garces, ... Journal of virology 89 (2), 1105-1118, 2015 | 101 | 2015 |
RAG: RNA-As-Graphs web resource D Fera, N Kim, N Shiffeldrim, J Zorn, U Laserson, HH Gan, T Schlick BMC bioinformatics 5, 1-9, 2004 | 101 | 2004 |
Reproducibility and Reuse of Adaptive Immune Receptor Repertoire Data F Breden, ETL Prak, B Peters, F Rubelt, CA Schramm, CE Busse, ... Frontiers in Immunology 8, 1418, 2017 | 97 | 2017 |
High-throughput immune sequencing GM Church, F Vigneault, U Laserson, I Bachelet US Patent 10,392,726, 2019 | 79 | 2019 |
AIRR community standardized representations for annotated immune repertoires JA Vander Heiden, S Marquez, N Marthandan, SAC Bukhari, CE Busse, ... Frontiers in immunology 9, 2206, 2018 | 77 | 2018 |