Biological knowledge management: the emerging role of the Semantic Web technologies E Antezana, M Kuiper, V Mironov Briefings in bioinformatics 10 (4), 392-407, 2009 | 225 | 2009 |
Ontology Design Patterns for bio-ontologies: a case study on the Cell Cycle Ontology ME Aranguren, E Antezana, M Kuiper, R Stevens BMC bioinformatics 9, 1-13, 2008 | 112 | 2008 |
BioGateway: a semantic systems biology tool for the life sciences E Antezana, W Blondé, M Egaña, A Rutherford, R Stevens, B De Baets, ... BMC bioinformatics 10, 1-15, 2009 | 99 | 2009 |
The aMAZE LightBench: a web interface to a relational database of cellular processes C Lemer, E Antezana, F Couche, F Fays, X Santolaria, R Janky, Y Deville, ... Nucleic Acids Research 32 (suppl_1), D443-D448, 2004 | 93 | 2004 |
Robotic crowd biology with Maholo LabDroids N Yachie, T Natsume Nature biotechnology 35 (4), 310-312, 2017 | 77 | 2017 |
BioHackathon series in 2011 and 2012: penetration of ontology and linked data in life science domains T Katayama, MD Wilkinson, KF Aoki-Kinoshita, S Kawashima, ... Journal of biomedical semantics 5, 1-13, 2014 | 69 | 2014 |
Applying ontology design patterns in bio-ontologies M Egana, A Rector, R Stevens, E Antezana Knowledge Engineering: Practice and Patterns: 16th International Conference …, 2008 | 63 | 2008 |
The Cell Cycle Ontology: an application ontology for the representation and integrated analysis of the cell cycle process E Antezana, M Egaña, W Blondé, A Illarramendi, I Bilbao, B De Baets, ... Genome Biology 10, 1-20, 2009 | 60 | 2009 |
The ontologies community of practice: a CGIAR initiative for big data in agrifood systems E Arnaud, MA Laporte, S Kim, C Aubert, S Leonelli, B Miro, L Cooper, ... Patterns 1 (7), 2020 | 58 | 2020 |
Transforming the axiomisation of ontologies: The ontology pre-processor language M Egaña Aranguren, R Stevens, E Antezana Nature Precedings, 1-1, 2009 | 56 | 2009 |
The 3rd DBCLS BioHackathon: improving life science data integration with Semantic Web technologies T Katayama, MD Wilkinson, G Micklem, S Kawashima, A Yamaguchi, ... Journal of biomedical semantics 4, 1-17, 2013 | 49 | 2013 |
Reasoning with bio-ontologies: using relational closure rules to enable practical querying W Blondé, V Mironov, A Venkatesan, E Antezana, B De Baets, M Kuiper Bioinformatics 27 (11), 1562-1568, 2011 | 43 | 2011 |
ONTO-PERL: an API for supporting the development and analysis of bio-ontologies E Antezana, M Egana, B De Baets, M Kuiper, V Mironov Bioinformatics 24 (6), 885-887, 2008 | 34 | 2008 |
Benchmarking triple stores with biological data V Mironov Nature Precedings, 1-1, 2010 | 19 | 2010 |
A cell-cycle knowledge integration framework E Antezana, E Tsiporkova, V Mironov, M Kuiper Data Integration in the Life Sciences: Third International Workshop, DILS …, 2006 | 19 | 2006 |
Cancer care treatment outcome ontology: a novel computable ontology for profiling treatment outcomes in patients with solid tumors FP Lin, T Groza, S Kocbek, E Antezana, RJ Epstein JCO clinical cancer informatics 2, 1-14, 2018 | 17 | 2018 |
Gauging triple stores with actual biological data V Mironov, N Seethappan, W Blondé, E Antezana, A Splendiani, M Kuiper BMC bioinformatics 13, 1-8, 2012 | 16 | 2012 |
Metarel: an Ontology to support the inferencing of Semantic Web relations within Biomedical Ontologies W Blondé, E Antezana, B De Baets, V Mironov, M Kuiper Nature Precedings, 1-1, 2009 | 12 | 2009 |
Structuring the life science resourceome for semantic systems biology: lessons from the BioGateway project. E Antezana, W Blondé, M Egana, A Rutherford, R Stevens, B De Baets, ... SWAT4LS, 2008 | 12 | 2008 |
Ten simple rules to run a successful BioHackathon L Garcia, E Antezana, A Garcia, E Bolton, R Jimenez, P Prins, JM Banda, ... PLOS Computational Biology 16 (5), e1007808, 2020 | 11 | 2020 |