| DNA-binding specificities of human transcription factors A Jolma, J Yan, T Whitington, J Toivonen, KR Nitta, P Rastas, ... Cell 152 (1), 327-339, 2013 | 1379 | 2013 |
| Counting absolute numbers of molecules using unique molecular identifiers T Kivioja, A Vähärautio, K Karlsson, M Bonke, M Enge, S Linnarsson, ... Nature methods 9 (1), 72-74, 2012 | 1224 | 2012 |
| Impact of cytosine methylation on DNA binding specificities of human transcription factors Y Yin, E Morgunova, A Jolma, E Kaasinen, B Sahu, S Khund-Sayeed, ... Science 356 (6337), eaaj2239, 2017 | 1117 | 2017 |
| Genome‐wide analysis of ETS‐family DNA‐binding in vitro and in vivo GH Wei, G Badis, MF Berger, T Kivioja, K Palin, M Enge, M Bonke, ... The EMBO journal 29 (13), 2147-2160, 2010 | 663 | 2010 |
| The common colorectal cancer predisposition SNP rs6983267 at chromosome 8q24 confers potential to enhanced Wnt signaling S Tuupanen, M Turunen, R Lehtonen, O Hallikas, S Vanharanta, T Kivioja, ... Nature genetics 41 (8), 885-890, 2009 | 598 | 2009 |
| DNA-dependent formation of transcription factor pairs alters their binding specificity A Jolma, Y Yin, KR Nitta, K Dave, A Popov, M Taipale, M Enge, T Kivioja, ... Nature 527 (7578), 384-388, 2015 | 560 | 2015 |
| Multiplexed massively parallel SELEX for characterization of human transcription factor binding specificities A Jolma, T Kivioja, J Toivonen, L Cheng, G Wei, M Enge, M Taipale, ... Genome research 20 (6), 861-873, 2010 | 529 | 2010 |
| CTCF/cohesin-binding sites are frequently mutated in cancer R Katainen, K Dave, E Pitkänen, K Palin, T Kivioja, N Välimäki, AE Gylfe, ... Nature genetics 47 (7), 818-821, 2015 | 459 | 2015 |
| Transcription factor binding in human cells occurs in dense clusters formed around cohesin anchor sites J Yan, M Enge, T Whitington, K Dave, J Liu, I Sur, B Schmierer, A Jolma, ... Cell 154 (4), 801-813, 2013 | 387 | 2013 |
| Conservation of transcription factor binding specificities across 600 million years of bilateria evolution KR Nitta, A Jolma, Y Yin, E Morgunova, T Kivioja, J Akhtar, K Hens, ... elife 4, e04837, 2015 | 259 | 2015 |
| Insights into p53 transcriptional function via genome-wide chromatin occupancy and gene expression analysis F Nikulenkov, C Spinnler, H Li, C Tonelli, Y Shi, M Turunen, T Kivioja, ... Cell Death & Differentiation 19 (12), 1992-2002, 2012 | 227 | 2012 |
| Application of active and kinase-deficient kinome collection for identification of kinases regulating hedgehog signaling M Varjosalo, M Björklund, F Cheng, H Syvänen, T Kivioja, S Kilpinen, ... Cell 133 (3), 537-548, 2008 | 210 | 2008 |
| Uterine leiomyoma-linked MED12 mutations disrupt mediator-associated CDK activity M Turunen, JM Spaeth, S Keskitalo, MJ Park, T Kivioja, AD Clark, ... Cell reports 7 (3), 654-660, 2014 | 166 | 2014 |
| Local average intensity-based method for identifying spherical particles in electron micrographs T Kivioja, J Ravantti, A Verkhovsky, E Ukkonen, D Bamford Journal of structural biology 131 (2), 126-134, 2000 | 122 | 2000 |
| Sequence determinants of human gene regulatory elements B Sahu, T Hartonen, P Pihlajamaa, B Wei, K Dave, F Zhu, E Kaasinen, ... Nature Genetics 54 (3), 283-294, 2022 | 109 | 2022 |
| Mutations in the Circadian Gene CLOCK in Colorectal Cancer P Alhopuro, M Björklund, H Sammalkorpi, M Turunen, S Tuupanen, ... Molecular Cancer Research 8 (7), 952-960, 2010 | 90 | 2010 |
| Binding specificities of human RNA-binding proteins toward structured and linear RNA sequences A Jolma, J Zhang, E Mondragón, E Morgunova, T Kivioja, KU Laverty, ... Genome research 30 (7), 962-973, 2020 | 85 | 2020 |
| Counting absolute number of molecules using unique molecular identifiers T Kivioja, A Vähärautio, K Karlsson, M Bonke, S Linnarsson, J Taipale Nature Precedings, 1-1, 2011 | 78 | 2011 |
| CRISPR/Cas9 screening using unique molecular identifiers B Schmierer, SK Botla, J Zhang, M Turunen, T Kivioja, J Taipale Molecular systems biology 13 (10), 945, 2017 | 67 | 2017 |
| Comparison of protein coding gene contents of the fungal phyla Pezizomycotina and Saccharomycotina M Arvas, T Kivioja, A Mitchell, M Saloheimo, D Ussery, M Penttila, S Oliver BMC genomics 8, 1-23, 2007 | 61 | 2007 |
