| Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea RM Bowers, NC Kyrpides, R Stepanauskas, M Harmon-Smith, D Doud, ... Nature biotechnology 35 (8), 725-731, 2017 | 1582 | 2017 |
| Single-cell genomics reveals hundreds of coexisting subpopulations in wild Prochlorococcus N Kashtan, SE Roggensack, S Rodrigue, JW Thompson, SJ Biller, A Coe, ... Science 344 (6182), 416-420, 2014 | 587 | 2014 |
| Minimum information about an uncultivated virus genome (MIUViG) S Roux, EM Adriaenssens, BE Dutilh, EV Koonin, AM Kropinski, ... Nature biotechnology 37 (1), 29-37, 2019 | 472 | 2019 |
| Microbial community transcriptomes reveal microbes and metabolic pathways associated with dissolved organic matter turnover in the sea J McCarren, JW Becker, DJ Repeta, Y Shi, CR Young, RR Malmstrom, ... Proceedings of the National Academy of Sciences 107 (38), 16420-16427, 2010 | 429 | 2010 |
| Whole genome amplification and de novo assembly of single bacterial cells S Rodrigue, RR Malmstrom, AM Berlin, BW Birren, MR Henn, ... PloS one 4 (9), e6864, 2009 | 375 | 2009 |
| The epigenomic landscape of prokaryotes MJ Blow, TA Clark, CG Daum, AM Deutschbauer, A Fomenkov, R Fries, ... PLoS genetics 12 (2), e1005854, 2016 | 335 | 2016 |
| Obtaining genomes from uncultivated environmental microorganisms using FACS–based single-cell genomics C Rinke, J Lee, N Nath, D Goudeau, B Thompson, N Poulton, E Dmitrieff, ... Nature protocols 9 (5), 1038-1048, 2014 | 306 | 2014 |
| Contribution of SAR11 bacteria to dissolved dimethylsulfoniopropionate and amino acid uptake in the North Atlantic Ocean RR Malmstrom, RP Kiene, MT Cottrell, DL Kirchman Applied and Environmental Microbiology 70 (7), 4129-4135, 2004 | 272 | 2004 |
| Differential depth distribution of microbial function and putative symbionts through sediment-hosted aquifers in the deep terrestrial subsurface AJ Probst, B Ladd, JK Jarett, DE Geller-McGrath, CMK Sieber, ... Nature microbiology 3 (3), 328-336, 2018 | 248 | 2018 |
| Temporal dynamics of Prochlorococcus ecotypes in the Atlantic and Pacific oceans RR Malmstrom, A Coe, GC Kettler, AC Martiny, J Frias-Lopez, ER Zinser, ... The ISME journal 4 (10), 1252-1264, 2010 | 247 | 2010 |
| Biogeography of major bacterial groups in the Delaware Estuary DL Kirchman, AI Dittel, RR Malmstrom, MT Cottrell Limnology and oceanography 50 (5), 1697-1706, 2005 | 241 | 2005 |
| Genome-wide selective sweeps and gene-specific sweeps in natural bacterial populations ML Bendall, SLR Stevens, LK Chan, S Malfatti, P Schwientek, J Tremblay, ... The ISME journal 10 (7), 1589-1601, 2016 | 236 | 2016 |
| Standing stocks and activity of Archaea and Bacteria in the western Arctic Ocean DL Kirchman, H Elifantz, AI Dittel, RR Malmstrom, MT Cottrell Limnology and Oceanography 52 (2), 495-507, 2007 | 219 | 2007 |
| Unlocking short read sequencing for metagenomics S Rodrigue, AC Materna, SC Timberlake, MC Blackburn, RR Malmstrom, ... PloS one 5 (7), e11840, 2010 | 203 | 2010 |
| Genome-wide identification of bacterial plant colonization genes BJ Cole, ME Feltcher, RJ Waters, KM Wetmore, TS Mucyn, EM Ryan, ... PLoS Biol 15 (9), e2002860, 2017 | 195 | 2017 |
| Visualizing in situ translational activity for identifying and sorting slow-growing archaeal− bacterial consortia R Hatzenpichler, SA Connon, D Goudeau, RR Malmstrom, T Woyke, ... Proceedings of the National Academy of Sciences 113 (28), E4069-E4078, 2016 | 191 | 2016 |
| Decontamination of MDA reagents for single cell whole genome amplification T Woyke, A Sczyrba, J Lee, C Rinke, D Tighe, S Clingenpeel, ... PloS one 6 (10), e26161, 2011 | 182 | 2011 |
| Biomass production and assimilation of dissolved organic matter by SAR11 bacteria in the Northwest Atlantic Ocean RR Malmstrom, MT Cottrell, H Elifantz, DL Kirchman Applied and environmental microbiology 71 (6), 2979-2986, 2005 | 180 | 2005 |
| Niche differentiation is spatially and temporally regulated in the rhizosphere EE Nuccio, E Starr, U Karaoz, EL Brodie, J Zhou, SG Tringe, ... The ISME journal 14 (4), 999-1014, 2020 | 167 | 2020 |
| Comparative single-cell genomics reveals potential ecological niches for the freshwater acI Actinobacteria lineage TW Ghylin, SL Garcia, F Moya, BO Oyserman, P Schwientek, KT Forest, ... The ISME journal 8 (12), 2503-2516, 2014 | 167 | 2014 |
