| Community assessment to advance computational prediction of cancer drug combinations in a pharmacogenomic screen MP Menden, D Wang, MJ Mason, B Szalai, KC Bulusu, Y Guan, T Yu, ... Nature communications 10 (1), 2674, 2019 | 308 | 2019 |
| A guide to studying human hair follicle cycling in vivo JW Oh, J Kloepper, EA Langan, Y Kim, J Yeo, MJ Kim, TC Hsi, C Rose, ... Journal of Investigative Dermatology 136 (1), 34-44, 2016 | 308 | 2016 |
| Nuclear receptor Nur77 limits the macrophage inflammatory response through transcriptional reprogramming of mitochondrial metabolism DS Koenis, L Medzikovic, PB van Loenen, M van Weeghel, S Huveneers, ... Cell reports 24 (8), 2127-2140. e7, 2018 | 130 | 2018 |
| Integrative epigenetic taxonomy of primary prostate cancer S Stelloo, E Nevedomskaya, Y Kim, K Schuurman, E Valle-Encinas, ... Nature communications 9 (1), 4900, 2018 | 129 | 2018 |
| Endogenous androgen receptor proteomic profiling reveals genomic subcomplex involved in prostate tumorigenesis S Stelloo, E Nevedomskaya, Y Kim, L Hoekman, OB Bleijerveld, T Mirza, ... Oncogene 37 (3), 313-322, 2018 | 108 | 2018 |
| Inference of dynamic networks using time-course data Y Kim, S Han, S Choi, D Hwang Briefings in bioinformatics 15 (2), 212-228, 2014 | 75 | 2014 |
| Characterizing steroid hormone receptor chromatin binding landscapes in male and female breast cancer TM Severson, Y Kim, SEP Joosten, K Schuurman, P Van Der Groep, ... Nature communications 9 (1), 482, 2018 | 68 | 2018 |
| Principal network analysis: identification of subnetworks representing major dynamics using gene expression data Y Kim, TK Kim, Y Kim, J Yoo, S You, I Lee, G Carlson, L Hood, S Choi, ... Bioinformatics 27 (3), 391-398, 2011 | 62 | 2011 |
| Optimized ChIP-seq method facilitates transcription factor profiling in human tumors AA Singh, K Schuurman, E Nevedomskaya, S Stelloo, S Linder, M Droog, ... Life science alliance 2 (1), 2019 | 52 | 2019 |
| Drug-induced epigenomic plasticity reprograms circadian rhythm regulation to drive prostate cancer toward androgen independence S Linder, M Hoogstraat, S Stelloo, N Eickhoff, K Schuurman, H de Barros, ... Cancer discovery 12 (9), 2074-2097, 2022 | 46 | 2022 |
| DNase-active TREX1 frame-shift mutants induce serologic autoimmunity in mice T Sakai, T Miyazaki, DM Shin, YS Kim, CF Qi, R Fariss, J Munasinghe, ... Journal of autoimmunity 81, 13-23, 2017 | 42 | 2017 |
| A comprehensive overview of RNA deconvolution methods and their application Y Im, Y Kim Molecules and cells 46 (2), 99-105, 2023 | 39 | 2023 |
| From proteomics toward systems biology: integration of different types of proteomics data into network models SC Rho, SY You, YS Kim, DH Hwang BMB reports 41 (3), 184-193, 2008 | 39 | 2008 |
| Characterization of ARF-BP1/HUWE1 interactions with CTCF, MYC, ARF and p53 in MYC-driven B cell neoplasms CF Qi, YS Kim, S Xiang, Z Abdullaev, TA Torrey, S Janz, AL Kovalchuk, ... International journal of molecular sciences 13 (5), 6204-6219, 2012 | 38 | 2012 |
| Quantitative proteomics identifies a β-catenin network as an element of the signaling response to frizzled-8 protein-related antiproliferative factor W Yang, YG Chung, Y Kim, TK Kim, SK Keay, CO Zhang, M Ji, D Hwang, ... Molecular & Cellular Proteomics 10 (6), 2011 | 38 | 2011 |
| Comparative cistromics reveals genomic cross-talk between FOXA1 and ERα in tamoxifen-associated endometrial carcinomas M Droog, E Nevedomskaya, Y Kim, T Severson, KD Flach, M Opdam, ... Cancer research 76 (13), 3773-3784, 2016 | 33 | 2016 |
| Estrogen receptor α wields treatment-specific enhancers between morphologically similar endometrial tumors M Droog, E Nevedomskaya, GM Dackus, R Fles, Y Kim, H Hollema, ... Proceedings of the National Academy of Sciences 114 (8), E1316-E1325, 2017 | 26 | 2017 |
| Bayesian log-normal deconvolution for enhanced in silico microdissection of bulk gene expression data B Andrade Barbosa, SD van Asten, JW Oh, A Farina-Sarasqueta, ... Nature communications 12 (1), 6106, 2021 | 21 | 2021 |
| A CRISPR-Cas9 screen identifies essential CTCF anchor sites for estrogen receptor-driven breast cancer cell proliferation G Korkmaz, Z Manber, R Lopes, S Prekovic, K Schuurman, Y Kim, ... Nucleic Acids Research 47 (18), 9557-9572, 2019 | 21 | 2019 |
| Double-strand break toxicity is chromatin context independent A Friskes, L Koob, L Krenning, TM Severson, ES Koeleman, X Vergara, ... Nucleic Acids Research 50 (17), 9930-9947, 2022 | 20 | 2022 |
