| A large-scale evaluation of computational protein function prediction P Radivojac, WT Clark, TR Oron, AM Schnoes, T Wittkop, A Sokolov, ... Nature methods 10 (3), 221-227, 2013 | 1083 | 2013 |
| Global proteome analysis of the NCI-60 cell line panel AM Gholami, H Hahne, Z Wu, FJ Auer, C Meng, M Wilhelm, B Kuster Cell reports 4 (3), 609-620, 2013 | 346 | 2013 |
| Explaining decisions of graph convolutional neural networks: patient-specific molecular subnetworks responsible for metastasis prediction in breast cancer H Chereda, A Bleckmann, K Menck, J Perera-Bel, P Stegmaier, F Auer, ... Genome medicine 13, 1-16, 2021 | 93 | 2021 |
| Homology-based inference sets the bar high for protein function prediction T Hamp, R Kassner, S Seemayer, E Vicedo, C Schaefer, D Achten, F Auer, ... BMC bioinformatics 14, 1-10, 2013 | 61 | 2013 |
| MISeval: a metric library for medical image segmentation evaluation D Müller, D Hartmann, P Meyer, F Auer, I Soto-Rey, F Kramer Challenges of Trustable AI and Added-Value on Health, 33-37, 2022 | 22 | 2022 |
| ndexr—an R package to interface with the network data exchange F Auer, Z Hammoud, A Ishkin, D Pratt, T Ideker, F Kramer Bioinformatics 34 (4), 716-717, 2018 | 12 | 2018 |
| RCX—an R package adapting the Cytoscape Exchange format for biological networks F Auer, F Kramer Bioinformatics Advances 2 (1), vbac020, 2022 | 5 | 2022 |
| MetaRelSubNetVis: Referenceable network visualizations based on integrated patient data with group-wise comparison F Auer, S Mayer, F Kramer bioRxiv, 2022.04. 18.488628, 2022 | 2 | 2022 |
| Comprehensive analysis of chemical structures that have been tested as CFTR activating substances in a publicly available database CandActCFTR MM Nietert, L Vinhoven, F Auer, S Hafkemeyer, F Stanke Frontiers in Pharmacology 12, 689205, 2021 | 2 | 2021 |
| MISM: A Medical Image Segmentation Metric for Evaluation of Weak Labeled Data D Hartmann, V Schmid, P Meyer, F Auer, I Soto-Rey, D Müller, F Kramer Diagnostics 13 (16), 2618, 2023 | 1 | 2023 |
| Web-based Prototype for Graphical Exploration of FHIR® Questionnaire Responses J Frei, FJ Auer, S Netzband, Y Ignatenko, F Kramer AMIA Annual Symposium Proceedings 2023, 351, 2023 | 1 | 2023 |
| Data-dependent visualization of biological networks in the web-browser with NDExEdit F Auer, S Mayer, F Kramer PLOS Computational Biology 18 (6), e1010205, 2022 | 1 | 2022 |
| Adaptation of HL7 FHIR for the exchange of patients' gene expression profiles F Auer, Z Abdykalykova, D Müller, F Kramer | 1 | 2022 |
| Adaptation of Graph Convolutional Neural Networks and Graph Layer-wise Relevance Propagation to the Spektral library with application to gene expression data of Colorectal … S Lutz, F Auer, D Hartmann, H Chereda, T Beißbarth, F Kramer bioRxiv, 2023.01. 26.525010, 2023 | | 2023 |
| Evaluation of the Availability of Nursing Quality Indicators in German FHIR Implementations S Netzband, K Ott, F Auer, F Kramer Healthcare Transformation with Informatics and Artificial Intelligence, 299-302, 2023 | | 2023 |
| The RCX extension hub: a resource for implementations extending the R adaption of the cytoscape exchange format F Auer, S Mayer, D Müller, F Kramer Caring is Sharing–Exploiting the Value in Data for Health and Innovation …, 2023 | | 2023 |
| A knowledge base for generating patient-specific pathways for individualized treatment decisions in clinical applications FJ Auer | | 2022 |
| Reproducible data integration and visualization of biological networks in R F Auer, H Chereda, J Perera-Bel, F Kramer bioRxiv, 2022.04. 15.488519, 2022 | | 2022 |
| Implementation of gene expression profiles in the HL7 FHIR standard F Auer, Z Abdykalykova, D Müller, F Kramer Challenges of Trustable AI and Added-Value on Health, 417-418, 2022 | | 2022 |
| Perspective on code submission and automated evaluation platforms for university teaching F Auer, J Frei, D Müller, F Kramer | | 2022 |
