| A new model for electron flow during anaerobic digestion: direct interspecies electron transfer to Methanosaeta for the reduction of carbon dioxide to methane AE Rotaru, PM Shrestha, F Liu, M Shrestha, D Shrestha, M Embree, ... Energy & Environmental Science 7 (1), 408-415, 2014 | 1249 | 2014 |
| Supplementation of saturated long-chain fatty acids maintains intestinal eubiosis and reduces ethanol-induced liver injury in mice P Chen, M Torralba, J Tan, M Embree, K Zengler, P Stärkel, ... Gastroenterology 148 (1), 203-214. e16, 2015 | 320 | 2015 |
| Networks of energetic and metabolic interactions define dynamics in microbial communities M Embree, JK Liu, MM Al-Bassam, K Zengler Proceedings of the National Academy of Sciences 112 (50), 15450-15455, 2015 | 259 | 2015 |
| Characterization and modelling of interspecies electron transfer mechanisms and microbial community dynamics of a syntrophic association H Nagarajan, M Embree, AE Rotaru, PM Shrestha, AM Feist, BØ Palsson, ... Nature communications 4 (1), 2809, 2013 | 131 | 2013 |
| Single-cell genome and metatranscriptome sequencing reveal metabolic interactions of an alkane-degrading methanogenic community M Embree, H Nagarajan, N Movahedi, H Chitsaz, K Zengler The ISME journal 8 (4), 757-767, 2014 | 130 | 2014 |
| The PurR regulon in Escherichia coli K-12 MG1655 BK Cho, SA Federowicz, M Embree, YS Park, D Kim, BØ Palsson Nucleic acids research 39 (15), 6456-6464, 2011 | 127 | 2011 |
| Sulfide-driven microbial electrosynthesis Y Gong, A Ebrahim, AM Feist, M Embree, T Zhang, D Lovley, K Zengler Environmental science & technology 47 (1), 568-573, 2013 | 114 | 2013 |
| Characterizing the interplay between multiple levels of organization within bacterial sigma factor regulatory networks Y Qiu, H Nagarajan, M Embree, W Shieu, E Abate, K Juárez, BK Cho, ... Nature communications 4 (1), 1755, 2013 | 58 | 2013 |
| Serum metabolites associated with feed efficiency in black angus steers BA Clemmons, RI Mihelic, RC Beckford, JB Powers, EA Melchior, ... Metabolomics 13, 1-8, 2017 | 48 | 2017 |
| Rumen fluid metabolomics of beef steers differing in feed efficiency BA Clemmons, JB Powers, SR Campagna, TB Seay, MM Embree, ... Metabolomics 16, 1-9, 2020 | 46 | 2020 |
| Acetate reprograms gut microbiota during alcohol consumption C Martino, LS Zaramela, B Gao, M Embree, J Tarasova, SJ Parker, ... Nature Communications 13 (1), 4630, 2022 | 42 | 2022 |
| Rumen bacteria and serum metabolites predictive of feed efficiency phenotypes in beef cattle BA Clemmons, C Martino, JB Powers, SR Campagna, BH Voy, ... Scientific Reports 9 (1), 19265, 2019 | 40 | 2019 |
| Methods, apparatuses, and systems for microorganism strain analysis of complex heterogeneous communities, predicting and identifying functional relationships and interactions … M Embree US Patent 10,851,399, 2020 | 39 | 2020 |
| The iron stimulon and fur regulon of Geobacter sulfurreducens and their role in energy metabolism M Embree, Y Qiu, W Shieu, H Nagarajan, R O'Neil, D Lovley, K Zengler Applied and environmental microbiology 80 (9), 2918-2927, 2014 | 39 | 2014 |
| Temporal stability of the ruminal bacterial communities in beef steers BA Clemmons, C Martino, LG Schneider, J Lefler, MM Embree, PR Myer Scientific reports 9 (1), 9522, 2019 | 35 | 2019 |
| Methods, apparatuses, and systems for analyzing microorganism strains from complex heterogeneous communities, predicting and identifying functional relationships and … K Zengler, M Embree US Patent 9,540,676, 2017 | 33 | 2017 |
| Ruminococcus bovis sp. nov., a novel species of amylolytic Ruminococcus isolated from the rumen of a dairy cow J Gaffney, J Embree, S Gilmore, M Embree International Journal of Systematic and Evolutionary Microbiology 71 (8), 004924, 2021 | 21 | 2021 |
| Methods of improving milk production and compositional characteristics M Embree, L Picking, G Gogul, J Tarasova US Patent 9,993,507, 2018 | 20 | 2018 |
| Methods, apparatuses, and systems for analyzing microorganism strains from complex heterogeneous communities, predicting and identifying functional relationships and … M Embree US Patent 9,938,558, 2018 | 20 | 2018 |
| Microbial compositions for improving milk production in ruminants M Embree, L Picking, G Gogul, J Tarasova US Patent 10,293,006, 2019 | 19 | 2019 |
