| An integrated encyclopedia of DNA elements in the human genome ENCODE Project Consortium Nature 489 (7414), 57, 2012 | 16958 | 2012 |
| Single-cell ChIP-seq reveals cell subpopulations defined by chromatin state A Rotem, O Ram, N Shoresh, RA Sperling, A Goren, DA Weitz, ... Nature biotechnology 33 (11), 1165-1172, 2015 | 912 | 2015 |
| The histone deacetylase SIRT6 is a tumor suppressor that controls cancer metabolism C Sebastián, BMM Zwaans, DM Silberman, M Gymrek, A Goren, L Zhong, ... Cell 151 (6), 1185-1199, 2012 | 710 | 2012 |
| Locus-specific editing of histone modifications at endogenous enhancers EM Mendenhall, KE Williamson, D Reyon, JY Zou, O Ram, JK Joung, ... Nature biotechnology 31 (12), 1133-1136, 2013 | 466 | 2013 |
| A high-throughput chromatin immunoprecipitation approach reveals principles of dynamic gene regulation in mammals M Garber, N Yosef, A Goren, R Raychowdhury, A Thielke, M Guttman, ... Molecular cell 47 (5), 810-822, 2012 | 418 | 2012 |
| Combinatorial patterning of chromatin regulators uncovered by genome-wide location analysis in human cells O Ram, A Goren, I Amit, N Shoresh, N Yosef, J Ernst, M Kellis, M Gymrek, ... Cell 147 (7), 1628-1639, 2011 | 396 | 2011 |
| Comparative analysis identifies exonic splicing regulatory sequences—the complex definition of enhancers and silencers A Goren, O Ram, M Amit, H Keren, G Lev-Maor, I Vig, T Pupko, G Ast Molecular cell 22 (6), 769-781, 2006 | 373 | 2006 |
| Intronic Alus Influence Alternative Splicing G Lev-Maor, O Ram, E Kim, N Sela, A Goren, EY Levanon, G Ast PLoS genetics 4 (9), e1000204, 2008 | 184 | 2008 |
| Single-molecule decoding of combinatorially modified nucleosomes E Shema, D Jones, N Shoresh, L Donohue, O Ram, BE Bernstein Science 352 (6286), 717-721, 2016 | 144 | 2016 |
| High-throughput single-cell labeling (Hi-SCL) for RNA-Seq using drop-based microfluidics A Rotem, O Ram, N Shoresh, RA Sperling, M Schnall-Levin, H Zhang, ... PloS one 10 (5), e0116328, 2015 | 144 | 2015 |
| A multiplexed system for quantitative comparisons of chromatin landscapes P van Galen, AD Viny, O Ram, RJH Ryan, MJ Cotton, L Donohue, ... Molecular cell 61 (1), 170-180, 2016 | 132 | 2016 |
| Detection and removal of biases in the analysis of next-generation sequencing reads S Schwartz, R Oren, G Ast PloS one 6 (1), e16685, 2011 | 129 | 2011 |
| Methods for Shearing and Tagging DNA for Chromatin Immunoprecipitation and Sequencing B Bernstein, A Goren, C Nusbaum, O Ram, A Rotem, D Tarjan, X Jeffrey, ... US Patent App. 14/900,217, 2016 | 108 | 2016 |
| Systems and methods for epigenetic sequencing A Rotem, O Ram, BE Bernstein, DA Weitz US Patent 11,001,883, 2021 | 105 | 2021 |
| Mass spectrometry reveals the chemistry of formaldehyde cross-linking in structured proteins T Tayri-Wilk, M Slavin, J Zamel, A Blass, S Cohen, A Motzik, X Sun, ... Nature communications 11 (1), 3128, 2020 | 86 | 2020 |
| SR proteins: a foot on the exon before the transition from intron to exon definition O Ram, G Ast Trends in Genetics 23 (1), 5-7, 2007 | 72 | 2007 |
| Fine-resolution mapping of TF binding and chromatin interactions J Gutin, R Sadeh, N Bodenheimer, D Joseph-Strauss, A Klein-Brill, ... Cell reports 22 (10), 2797-2807, 2018 | 65 | 2018 |
| Direct induction of the three pre-implantation blastocyst cell types from fibroblasts H Benchetrit, M Jaber, V Zayat, S Sebban, A Pushett, K Makedonski, ... Cell stem cell 24 (6), 983-994. e7, 2019 | 61 | 2019 |
| The Pivotal Roles of TIA Proteins in 5′ Splice-Site Selection of Alu Exons and Across Evolution N Gal-Mark, S Schwartz, O Ram, E Eyras, G Ast PLoS genetics 5 (11), e1000717, 2009 | 45 | 2009 |
| Multifactorial Interplay Controls the Splicing Profile of Alu-Derived Exons O Ram, S Schwartz, G Ast Molecular and cellular biology 28 (10), 3513-3525, 2008 | 36 | 2008 |
