pathfindR: an R package for comprehensive identification of enriched pathways in omics data through active subnetworks E Ulgen, O Ozisik, OU Sezerman Frontiers in genetics 10, 425394, 2019 | 294 | 2019 |
Potential marker pathways in the endometrium that may cause recurrent implantation failure E Bastu, I Demiral, T Gunel, E Ulgen, E Gumusoglu, MK Hosseini, ... Reproductive Sciences 26 (7), 879-890, 2019 | 59 | 2019 |
CogNet: classification of gene expression data based on ranked active-subnetwork-oriented KEGG pathway enrichment analysis M Yousef, E Ülgen, OU Sezerman PeerJ Computer Science 7, e336, 2021 | 37 | 2021 |
Use of telomerase promoter mutations to mark specific molecular subsets with reciprocal clinical behavior in IDH mutant and IDH wild-type diffuse gliomas CB Akyerli, Ş Yüksel, Ö Can, EZ Erson-Omay, Y Oktay, E Coşgun, ... Journal of neurosurgery 128 (4), 1102-1114, 2018 | 32 | 2018 |
IDH-mutant glioma specific association of rs55705857 located at 8q24. 21 involves MYC deregulation Y Oktay, E Ülgen, Ö Can, CB Akyerli, Ş Yüksel, Y Erdemgil, İM Durası, ... Scientific reports 6 (1), 27569, 2016 | 32 | 2016 |
pathfindR: an R package for pathway enrichment analysis utilizing active subnetworks E Ulgen, O Ozisik, OU Sezerman BioRxiv, 272450, 2018 | 29 | 2018 |
ALPK3 gene mutation in a patient with congenital cardiomyopathy and dysmorphic features AO Çağlayan, RG Sezer, H Kaymakçalan, E Ulgen, T Yavuz, ... Molecular Case Studies 3 (5), a001859, 2017 | 27 | 2017 |
Meningiomas display a specific immunoexpression pattern in a rostrocaudal gradient: an analysis of 366 patients E Ülgen, PK Bektaşoğlu, MA Sav, Ö Can, AE Danyeli, DB Hızal, MN Pamir, ... World Neurosurgery 123, e520-e535, 2019 | 24 | 2019 |
Whole exome sequencing–based analysis to identify DNA damage repair deficiency as a major contributor to gliomagenesis in adult diffuse gliomas E Ülgen, Ö Can, K Bilguvar, Y Oktay, CB Akyerli, AE Danyeli, MC Yakıcıer, ... Journal of Neurosurgery 132 (5), 1435-1446, 2019 | 17 | 2019 |
pathfindR: an R package for comprehensive identification of enriched pathways in omics data through active subnetworks. Front Genet. 2019; 10: 858 E Ulgen, O Ozisik, OU Sezerman | 14 | 2019 |
driveR: a novel method for prioritizing cancer driver genes using somatic genomics data E Ülgen, OU Sezerman BMC bioinformatics 22, 1-17, 2021 | 12 | 2021 |
Bioinformatics workflows for genomic variant discovery, interpretation and prioritization OU Sezerman, E Ulgen, N Seymen, IM Durasi Bioinformatics tools for detection and clinical interpretation of genomic …, 2019 | 12 | 2019 |
Endometrial gene expression profiling of recurrent implantation failure after in vitro fertilization İG Albayrak, F Azhari, EN Çolak, BK Balcı, E Ülgen, U Sezerman, E Baştu, ... Molecular Biology Reports 48 (6), 5075-5082, 2021 | 11 | 2021 |
Clinical, electrodiagnostic, and genetic features of Tangier disease in an adolescent girl with presentation of peripheral neuropathy H Per, M Canpolat, AK Bayram, E Ulgen, B Baran, F Kardas, H Gumus, ... Neuropediatrics 46 (06), 420-423, 2015 | 9 | 2015 |
Comparison of endometrial prostanoid profiles in three infertile subgroups: the missing part of receptivity? ID Keleş, E Ülgen, MB Erkan, SE Çelik, Y Aydın, AN Önem, H Kandemir, ... Fertility and Sterility 113 (3), 670-678. e1, 2020 | 8 | 2020 |
A rare case of congenital fibrosis of extraocular muscle type 1A due to KIF21A mutation with Marcus Gunn jaw-winking phenomenon AK Bayram, H Per, J Quon, M Canpolat, E Ülgen, H Doğan, H Gumus, ... european journal of paediatric neurology 19 (6), 743-746, 2015 | 8 | 2015 |
Mutations and Copy Number Alterations in IDH Wild-Type Glioblastomas Are Shaped by Different Oncogenic Mechanisms E Ülgen, S Karacan, U Gerlevik, Ö Can, K Bilguvar, Y Oktay, C B. Akyerli, ... Biomedicines 8 (12), 574, 2020 | 6 | 2020 |
Integrated bioinformatics analysis of validated and circulating miRNAs in ovarian cancer B Dogan, E Gumusoglu, E Ulgen, OU Sezerman, T Gunel Genomics & Informatics 20 (2), 2022 | 5 | 2022 |
Correlation of anatomical involvement patterns of insular gliomas with subnetworks of the limbic system E Ülgen, FK Aras, E Coşgun, A Erşen-Danyeli, A Dinçer, Mİ Usseli, ... Journal of Neurosurgery 136 (2), 323-334, 2021 | 5 | 2021 |
Gene pathway analysis of the endometrium at the start of the window of implantation in women with unexplained infertility and unexplained recurrent pregnancy loss: is … ID Keleş, T Günel, BY Özgör, E Ülgen, E Gümüşoğlu, MK Hosseini, ... Human Fertility 26 (5), 1129-1141, 2023 | 4 | 2023 |