A universal RNAi-based logic evaluator that operates in mammalian cells K Rinaudo, L Bleris, R Maddamsetti, S Subramanian, R Weiss, ... Nature biotechnology 25 (7), 795-801, 2007 | 601 | 2007 |
Adaptation, Clonal Interference, and Frequency-Dependent Interactions in a Long-Term Evolution Experiment with Escherichia coli R Maddamsetti, RE Lenski, JE Barrick Genetics 200 (2), 619-631, 2015 | 183 | 2015 |
Sustained fitness gains and variability in fitness trajectories in the long-term evolution experiment with Escherichia coli RE Lenski, MJ Wiser, N Ribeck, ZD Blount, JR Nahum, JJ Morris, ... Proceedings of the Royal Society B: Biological Sciences 282 (1821), 20152292, 2015 | 164 | 2015 |
Large-scale discovery of protein interactions at residue resolution using co-evolution calculated from genomic sequences AG Green, H Elhabashy, KP Brock, R Maddamsetti, O Kohlbacher, ... Nature communications 12 (1), 1396, 2021 | 83 | 2021 |
Core Genes Evolve Rapidly in the Long-Term Evolution Experiment with Escherichia coli R Maddamsetti, PJ Hatcher, AG Green, BL Williams, DS Marks, RE Lenski Genome biology and evolution 9 (4), 1072-1083, 2017 | 69 | 2017 |
Intra-and interpopulation transposition of mobile genetic elements driven by antibiotic selection Y Yao, R Maddamsetti, A Weiss, Y Ha, T Wang, S Wang, L You Nature Ecology & Evolution 6 (5), 555-564, 2022 | 44 | 2022 |
Genome-wide discovery of epistatic loci affecting antibiotic resistance in Neisseria gonorrhoeae using evolutionary couplings B Schubert, R Maddamsetti, J Nyman, MR Farhat, DS Marks Nature Microbiology 4 (2), 328-338, 2019 | 43 | 2019 |
Haplotype-phased synthetic long reads from short-read sequencing JA Stapleton, J Kim, JP Hamilton, M Wu, LC Irber, R Maddamsetti, ... PloS one 11 (1), e0147229, 2016 | 37 | 2016 |
Analysis of bacterial genomes from an evolution experiment with horizontal gene transfer shows that recombination can sometimes overwhelm selection R Maddamsetti, RE Lenski PLoS genetics 14 (1), e1007199, 2018 | 34 | 2018 |
Genomic and phenotypic evolution of Escherichia coli in a novel citrate-only resource environment ZD Blount, R Maddamsetti, NA Grant, ST Ahmed, T Jagdish, JA Baxter, ... Elife 9, e55414, 2020 | 32 | 2020 |
Phylogenomic analysis of the uracil-DNA glycosylase superfamily JI Lucas-Lledó, R Maddamsetti, M Lynch Molecular biology and evolution 28 (3), 1307-1317, 2011 | 31 | 2011 |
Divergent Evolution of Mutation Rates and Biases in the Long-Term Evolution Experiment with Escherichia coli R Maddamsetti, NA Grant Genome biology and evolution 12 (9), 1591-1603, 2020 | 24 | 2020 |
Synonymous Genetic Variation in Natural Isolates of Escherichia coli Does Not Predict Where Synonymous Substitutions Occur in a Long-Term Experiment R Maddamsetti, PJ Hatcher, S Cruveiller, C Médigue, JE Barrick, ... Molecular biology and evolution 32 (11), 2897-2904, 2015 | 21 | 2015 |
Gain‐of‐function experiments with bacteriophage lambda uncover residues under diversifying selection in nature R Maddamsetti, DT Johnson, SJ Spielman, KL Petrie, DS Marks, ... Evolution 72 (10), 2234-2243, 2018 | 15 | 2018 |
Maintenance of Metabolic Plasticity despite Relaxed Selection in a Long-Term Evolution Experiment with Escherichia coli NA Grant, R Maddamsetti, RE Lenski The American Naturalist 198 (1), 93-112, 2021 | 13 | 2021 |
Universal Constraints on Protein Evolution in the Long-Term Evolution Experiment with Escherichia coli R Maddamsetti Genome biology and evolution 13 (6), evab070, 2021 | 8 | 2021 |
Discovery of positive and purifying selection in metagenomic time series of hypermutator microbial populations R Maddamsetti, NA Grant PLoS genetics 18 (8), e1010324, 2022 | 7* | 2022 |
Selection Maintains Protein Interactome Resilience in the Long-Term Evolution Experiment with Escherichia coli R Maddamsetti Genome biology and evolution 13 (6), evab074, 2021 | 6 | 2021 |
Proteome-scale discovery of protein interactions with residue-level resolution using sequence coevolution AG Green, H Elhabashy, KP Brock, R Maddamsetti, O Kohlbacher, ... bioRxiv, 791293, 2019 | 6 | 2019 |
Duplicated antibiotic resistance genes reveal ongoing selection and horizontal gene transfer in bacteria R Maddamsetti, Y Yao, T Wang, J Gao, VT Huang, GS Hamrick, HI Son, ... Nature Communications 15 (1), 1449, 2024 | 4 | 2024 |