| CDK7 inhibition potentiates genome instability triggering anti-tumor immunity in small cell lung cancer H Zhang, CL Christensen, R Dries, MG Oser, J Deng, B Diskin, F Li, Y Pan, ... Cancer cell 37 (1), 37-54. e9, 2020 | 176 | 2020 |
| Gene regulatory network reconstruction using single-cell RNA sequencing of barcoded genotypes in diverse environments CA Jackson, DM Castro, GA Saldi, R Bonneau, D Gresham elife 9, e51254, 2020 | 158 | 2020 |
| Leveraging chromatin accessibility for transcriptional regulatory network inference in T Helper 17 Cells ER Miraldi, M Pokrovskii, A Watters, DM Castro, N De Veaux, JA Hall, ... Genome research 29 (3), 449-463, 2019 | 113 | 2019 |
| Multi-study inference of regulatory networks for more accurate models of gene regulation DM Castro, NR De Veaux, ER Miraldi, R Bonneau PLoS computational biology 15 (1), e1006591, 2019 | 75 | 2019 |
| High-performance single-cell gene regulatory network inference at scale: the Inferelator 3.0 C Skok Gibbs, CA Jackson, GA Saldi, A Tjärnberg, A Shah, A Watters, ... Bioinformatics 38 (9), 2519-2528, 2022 | 28 | 2022 |
| Identification of new therapeutic targets in CRLF2-overexpressing B-ALL through discovery of TF-gene regulatory interactions S Badri, B Carella, P Lhoumaud, DM Castro, CS Gibbs, R Raviram, ... bioRxiv, 654418, 2019 | 1 | 2019 |
| Integrative Methods for Gene Regulatory Network Inference DM de Castro New York University, 2019 | | 2019 |
| A B-cell acute lymphoblastic leukemia regulatory network defines novel therapeutic targets in IGH-CRLF2 patients S Badri, B Carella, P Lhoumaud, DM Castro, R Raviram, A Watters, ... bioRxiv, 654418, 2019 | | 2019 |
