SBML Level 3: an extensible format for the exchange and reuse of biological models SM Keating, D Waltemath, M König, F Zhang, A Dräger, C Chaouiya, ... Molecular systems biology 16 (8), e9110, 2020 | 220 | 2020 |
Sharing structure and function in biological design with SBOL 2.0 N Roehner, J Beal, K Clancy, B Bartley, G Misirli, R Grunberg, ... ACS synthetic biology 5 (6), 498-506, 2016 | 99 | 2016 |
iBioSim 3: A Tool for Model-Based Genetic Circuit Design L Watanabe, T Nguyen, M Zhang, Z Zundel, Z Zhang, C Madsen, ... ACS synthetic biology 8 (7), 1560-1563, 2018 | 85 | 2018 |
Synthetic biology open language (SBOL) version 2.0. 0 B Bartley, J Beal, K Clancy, G Misirli, N Roehner, E Oberortner, M Pocock, ... Journal of integrative bioinformatics 12 (2), 902-991, 2015 | 73 | 2015 |
Synthetic biology open language (SBOL) version 2.2. 0 RS Cox, C Madsen, JA McLaughlin, T Nguyen, N Roehner, B Bartley, ... Journal of integrative bioinformatics 15 (1), 2018 | 56 | 2018 |
Synthetic biology open language visual (SBOL visual) version 2.0 RS Cox, C Madsen, J McLaughlin, T Nguyen, N Roehner, B Bartley, ... Journal of integrative bioinformatics 15 (1), 2018 | 56* | 2018 |
A standard-enabled workflow for synthetic biology CJ Myers, J Beal, TE Gorochowski, H Kuwahara, C Madsen, ... Biochemical Society Transactions 45 (3), 793-803, 2017 | 44 | 2017 |
A computational workflow for the automated generation of models of genetic designs G Misirli, T Nguyen, JA McLaughlin, P Vaidyanathan, TS Jones, ... ACS synthetic biology 8 (7), 1548-1559, 2018 | 37 | 2018 |
Communicating structure and function in synthetic biology diagrams J Beal, T Nguyen, TE Gorochowski, A Goñi-Moreno, J Scott-Brown, ... ACS synthetic biology 8 (8), 1818-1825, 2019 | 36 | 2019 |
Generating systems biology markup language models from the synthetic biology open language N Roehner, Z Zhang, T Nguyen, CJ Myers ACS synthetic biology 4 (8), 873-879, 2015 | 34 | 2015 |
libSBOLj 2.0: a java library to support SBOL 2.0 Z Zhang, T Nguyen, N Roehner, G Misirli, M Pocock, E Oberortner, ... IEEE life sciences letters 1 (4), 34-37, 2015 | 33 | 2015 |
Synthetic biology open language (SBOL) version 2.3 C Madsen, AG Moreno, P Umesh, Z Palchick, N Roehner, C Atallah, ... Journal of integrative bioinformatics 16 (2), 2019 | 31 | 2019 |
Synthetic biology open language (SBOL) version 2.1. 0 J Beal, RS Cox, R Grünberg, J McLaughlin, T Nguyen, B Bartley, M Bissell, ... Journal of integrative bioinformatics 13 (3), 30-132, 2016 | 25 | 2016 |
A converter from the systems biology markup language to the synthetic biology open language T Nguyen, N Roehner, Z Zundel, CJ Myers ACS synthetic biology 5 (6), 479-486, 2016 | 25 | 2016 |
pySBOL: a python package for genetic design automation and standardization BA Bartley, K Choi, M Samineni, Z Zundel, T Nguyen, CJ Myers, ... ACS synthetic biology 8 (7), 1515-1518, 2018 | 20 | 2018 |
Design of asynchronous genetic circuits T Nguyen, TS Jones, P Fontanarrosa, JV Mante, Z Zundel, D Densmore, ... Proceedings of the IEEE 107 (7), 1356-1368, 2019 | 18 | 2019 |
Synthetic biology open language visual (SBOL visual) version 2.1 C Madsen, AG Moreno, Z Palchick, P Umesh, N Roehner, B Bartley, ... Journal of integrative bioinformatics 16 (2), 2019 | 10 | 2019 |
Synthetic biology open language visual (SBOL visual) version 2.2 H Baig, P Fontanarrosa, V Kulkarni, J McLaughlin, P Vaidyanathan, ... Journal of integrative bioinformatics 17 (2-3), 2020 | 8 | 2020 |
ASYNCHRONOUS GENETIC CIRCUIT DESIGN TT Nguyen The University of Utah, 2019 | | 2019 |
BBF RFC 114: Synthetic Biology Open Language (SBOL) Version 2.2. 0 RS Cox, C Madsen, J McLaughlin, T Nguyen, N Roehner, A Wipat, J Beal, ... | | 2017 |