关注
Erik N. Bergstrom
Erik N. Bergstrom
在 ucsd.edu 的电子邮件经过验证
标题
引用次数
引用次数
年份
The repertoire of mutational signatures in human cancer
LB Alexandrov, J Kim, NJ Haradhvala, MN Huang, AW Tian Ng, Y Wu, ...
Nature 578 (7793), 94-101, 2020
26572020
Pan-cancer analysis of whole genomes
Nature 578 (7793), 82-93, 2020
1753*2020
SigProfilerMatrixGenerator: a tool for visualizing and exploring patterns of small mutational events
EN Bergstrom, MN Huang, U Mahto, M Barnes, MR Stratton, SG Rozen, ...
BMC genomics 20, 1-12, 2019
1882019
Uncovering novel mutational signatures by de novo extraction with SigProfilerExtractor
SMA Islam, M Díaz-Gay, Y Wu, M Barnes, R Vangara, EN Bergstrom, ...
Cell genomics 2 (11), 2022
1672022
Mechanisms of APOBEC3 mutagenesis in human cancer cells
M Petljak, A Dananberg, K Chu, EN Bergstrom, J Striepen, P von Morgen, ...
Nature 607 (7920), 799-807, 2022
1292022
Mapping clustered mutations in cancer reveals APOBEC3 mutagenesis of ecDNA
EN Bergstrom, J Luebeck, M Petljak, A Khandekar, M Barnes, T Zhang, ...
Nature 602 (7897), 510-517, 2022
902022
Mutational signatures in esophageal squamous cell carcinoma from eight countries with varying incidence
S Moody, S Senkin, SMA Islam, J Wang, D Nasrollahzadeh, ...
Nature genetics 53 (11), 1553-1563, 2021
902021
Generating realistic null hypothesis of cancer mutational landscapes using SigProfilerSimulator
EN Bergstrom, M Barnes, I Martincorena, LB Alexandrov
BMC bioinformatics 21, 1-10, 2020
292020
Multiomic analysis of malignant pleural mesothelioma identifies molecular axes and specialized tumor profiles driving intertumor heterogeneity
L Mangiante, N Alcala, A Sexton-Oates, A Di Genova, A Gonzalez-Perez, ...
Nature Genetics 55 (4), 607-618, 2023
26*2023
APOBEC3B regulates R-loops and promotes transcription-associated mutagenesis in cancer
JL McCann, A Cristini, EK Law, SY Lee, M Tellier, MA Carpenter, C Beghè, ...
Nature Genetics 55 (10), 1721-1734, 2023
23*2023
Topography of mutational signatures in human cancer
B Otlu, M Díaz-Gay, I Vermes, EN Bergstrom, M Zhivagui, M Barnes, ...
Cell reports 42 (8), 2023
212023
Examining clustered somatic mutations with SigProfilerClusters
EN Bergstrom, M Kundu, N Tbeileh, LB Alexandrov
Bioinformatics 38 (13), 3470-3473, 2022
152022
Visualizing and exploring patterns of large mutational events with SigProfilerMatrixGenerator
A Khandekar, R Vangara, M Barnes, M Díaz-Gay, A Abbasi, ...
BMC genomics 24 (1), 469, 2023
62023
Geographic variation of mutagenic exposures in kidney cancer genomes
S Senkin, S Moody, M Díaz-Gay, B Abedi-Ardekani, T Cattiaux, ...
Nature, 1-9, 2024
52024
Author Correction: Comprehensive analysis of chromothripsis in 2,658 human cancers using whole-genome sequencing
I Cortés-Ciriano, JJK Lee, R Xi, D Jain, YL Jung, L Yang, D Gordenin, ...
nature genetics 55 (6), 1076-1076, 2023
22023
Synchronous, yet genomically distinct, GIST offer new insights into precise targeting of tumor driver mutations
EA Makris, AK Sharma, EN Bergstrom, X Xu, J Torre, S Banerjee, ...
JCO Precision Oncology 5, 525-532, 2021
22021
APOBEC shapes tumor evolution and age at onset of lung cancer in smokers
T Zhang, J Sang, PH Hoang, W Zhao, J Rosenbaum, KE Johnson, ...
bioRxiv, 2024
12024
Deep learning predicts HRD and platinum response from histology slides in breast and ovarian cancer
EN Bergstrom, A Abbasi, M Díaz-Gay, L Galland, SM Lippman, S Ladoire, ...
medRxiv, 2023.02. 23.23285869, 2023
12023
The mutagenic forces shaping the genomic landscape of lung cancer in never smokers
M Díaz-Gay, T Zhang, PH Hoang, A Khandekar, W Zhao, CD Steele, ...
medRxiv, 2024
2024
Abstract LB391: Deep learning AI predicts HRD and platinum response from histologic slides
EN Bergstrom, A Abbasi, M Diaz-Gay, L Galland, S Ladoire, SM Lippman, ...
Cancer Research 84 (7_Supplement), LB391-LB391, 2024
2024
系统目前无法执行此操作,请稍后再试。
文章 1–20