| HDOCK: a web server for protein–protein and protein–DNA/RNA docking based on a hybrid strategy Y Yan, D Zhang, P Zhou, B Li, SY Huang Nucleic acids research 45 (W1), W365-W373, 2017 | 912 | 2017 |
| Efficient conformational ensemble generation of protein-bound peptides Y Yan, DI Zhang, SY Huang Journal of cheminformatics 9, 1-13, 2017 | 62 | 2017 |
| Global and gene-specific translational regulation in Escherichia coli across different conditions D Zhang, SHJ Li, CG King, NS Wingreen, Z Gitai, Z Li PLoS computational biology 18 (10), e1010641, 2022 | 13 | 2022 |
| Determination of an effective scoring function for RNA–RNA interactions with a physics-based double-iterative method Y Yan, Z Wen, D Zhang, SY Huang Nucleic Acids Research 46 (9), e56-e56, 2018 | 7 | 2018 |
| New knowledge-based scoring function with inclusion of backbone conformational entropies from protein structures X Wang, D Zhang, SY Huang Journal of Chemical Information and Modeling 58 (3), 724-732, 2018 | 7 | 2018 |
| A logic-incorporated gene regulatory network deciphers principles in cell fate decisions G Xue, X Zhang, W Li, L Zhang, Z Zhang, X Zhou, D Zhang, L Zhang, Z Li Elife 12, RP88742, 2024 | 5 | 2024 |
| From sequence to molecules: Feature sequence-based genome mining uncovers the hidden diversity of bacterial siderophore pathways S Gu, Y Shao, K Rehm, L Bigler, D Zhang, R He, R Xu, J Shao, A Jousset, ... bioRxiv, 2023.10. 30.564663, 2023 | 3 | 2023 |
| Dual-omics reveals temporal differences in acute sympathetic stress-induced cardiac inflammation following α1 and β-adrenergic receptors activation D Zhang, M Zhao, J Wu, R Wang, G Xue, Y Xue, J Shao, Y Zhang, E Dong, ... Acta Pharmacologica Sinica 44 (7), 1350-1365, 2023 | 2 | 2023 |
| AMPK attenuation of β-adrenergic receptor-induced cardiac injury via phosphorylation of β-arrestin-1-ser330 M Zhao, N Cao, H Gu, J Xu, W Xu, D Zhang, TYW Wei, K Wang, R Guo, ... Circulation Research 135 (6), 651-667, 2024 | 1 | 2024 |
| Forging the Iron-Net: Towards a Quantitative Understanding of Microbial Communities via Siderophore-Mediated Interactions S Gu, R He, G Xiong, Z Qu, Y Shao, L Yu, D Zhang, F Wang, R Xu, P Guo, ... Preprints, 2024 | | 2024 |
