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Rapid epidemic expansion of the SARS-CoV-2 Omicron variant in southern Africa R Viana, S Moyo, DG Amoako, H Tegally, C Scheepers, CL Althaus, ... Nature 603 (7902), 679-686, 2022 | 1457 | 2022 |
Emergence and rapid spread of a new severe acute respiratory syndrome-related coronavirus 2 (SARS-CoV-2) lineage with multiple spike mutations in South Africa H Tegally, E Wilkinson, M Giovanetti, A Iranzadeh, V Fonseca, ... medrxiv, 2020.12. 21.20248640, 2020 | 1203 | 2020 |
Omicron extensively but incompletely escapes Pfizer BNT162b2 neutralization S Cele, L Jackson, DS Khoury, K Khan, T Moyo-Gwete, H Tegally, JE San, ... Nature 602 (7898), 654-656, 2022 | 1034 | 2022 |
Emergence of SARS-CoV-2 omicron lineages BA. 4 and BA. 5 in South Africa H Tegally, M Moir, J Everatt, M Giovanetti, C Scheepers, E Wilkinson, ... Nature medicine 28 (9), 1785-1790, 2022 | 539 | 2022 |
SARS-CoV-2 Omicron has extensive but incomplete escape of Pfizer BNT162b2 elicited neutralization and requires ACE2 for infection S Cele, L Jackson, DS Khoury, K Khan, T Moyo-Gwete, H Tegally, JE San, ... MedRxiv, 2021 | 365 | 2021 |
Sixteen novel lineages of SARS-CoV-2 in South Africa H Tegally, E Wilkinson, RJ Lessells, J Giandhari, S Pillay, N Msomi, ... Nature medicine 27 (3), 440-446, 2021 | 361 | 2021 |
The emergence and ongoing convergent evolution of the SARS-CoV-2 N501Y lineages DP Martin, S Weaver, H Tegally, JE San, SD Shank, E Wilkinson, ... Cell 184 (20), 5189-5200. e7, 2021 | 258 | 2021 |
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A year of genomic surveillance reveals how the SARS-CoV-2 pandemic unfolded in Africa E Wilkinson, M Giovanetti, H Tegally, JE San, R Lessells, D Cuadros, ... Science 374 (6566), 423-431, 2021 | 193 | 2021 |
SARS-CoV-2 prolonged infection during advanced HIV disease evolves extensive immune escape S Cele, F Karim, G Lustig, JE San, T Hermanus, H Tegally, J Snyman, ... Cell host & microbe 30 (2), 154-162. e5, 2022 | 174 | 2022 |
Emergence of a SARS-CoV-2 variant of concern with mutations in spike glycoprotein H Tegally, E Wilkinson, M Giovanetti, A Iranzadeh, V Fonseca, ... Nature 592 (7854), 438-443, 2021 | 150 | 2021 |
Omicron BA. 4/BA. 5 escape neutralizing immunity elicited by BA. 1 infection K Khan, F Karim, Y Ganga, M Bernstein, Z Jule, K Reedoy, S Cele, ... Nature communications 13 (1), 4686, 2022 | 146 | 2022 |
Continued emergence and evolution of Omicron in South Africa: New BA. 4 and BA. 5 lineages H Tegally, M Moir, J Everatt, M Giovanetti, C Scheepers, E Wilkinson, ... MedRxiv, 2022.05. 01.22274406, 2022 | 109 | 2022 |
Persistent SARS-CoV-2 infection and intra-host evolution in association with advanced HIV infection F Karim, MYS Moosa, BI Gosnell, S Cele, J Giandhari, S Pillay, H Tegally, ... MedRxiv, 2021.06. 03.21258228, 2021 | 99 | 2021 |
The evolving SARS-CoV-2 epidemic in Africa: Insights from rapidly expanding genomic surveillance H Tegally, JE San, M Cotten, M Moir, B Tegomoh, G Mboowa, DP Martin, ... Science 378 (6615), eabq5358, 2022 | 95 | 2022 |
Whole genome sequencing of SARS-CoV-2: adapting Illumina protocols for quick and accurate outbreak investigation during a pandemic S Pillay, J Giandhari, H Tegally, E Wilkinson, B Chimukangara, R Lessells, ... Genes 11 (8), 949, 2020 | 91 | 2020 |
HIV-1 and SARS-CoV-2: Patterns in the evolution of two pandemic pathogens W Fischer, EE Giorgi, S Chakraborty, K Nguyen, T Bhattacharya, J Theiler, ... Cell host & microbe 29 (7), 1093-1110, 2021 | 85 | 2021 |
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Omicron sub-lineages BA. 4/BA. 5 escape BA. 1 infection elicited neutralizing immunity K Khan, F Karim, Y Ganga, M Bernstein, Z Jule, K Reedoy, S Cele, ... MedRxiv, 2022.04. 29.22274477, 2022 | 81 | 2022 |