| DNA nanostructures coordinate gene silencing in mature plants H Zhang, GS Demirer, H Zhang, T Ye, NS Goh, AJ Aditham, ... Proceedings of the National Academy of Sciences 116 (15), 7543-7548, 2019 | 259 | 2019 |
| Engineering single pan-specific ubiquibodies for targeted degradation of all forms of endogenous ERK protein kinase EA Stephens, MB Ludwicki, B Meksiriporn, M Li, T Ye, C Monticello, ... ACS Synthetic Biology 10 (9), 2396-2408, 2021 | 17 | 2021 |
| SaLT&PepPr is an interface-predicting language model for designing peptide-guided protein degraders G Brixi, T Ye, L Hong, T Wang, C Monticello, N Lopez-Barbosa, S Vincoff, ... Communications Biology 6 (1), 1081, 2023 | 14 | 2023 |
| Design of peptide-guided protein degraders with Structure-agnostic language models G Brixi, T Ye, K Palepu, L Hong, V Yudistyra, S Vincoff, J Christopher, X Li, ... | 5 | 2023 |
| De novo design of peptide binders to conformationally diverse targets with contrastive language modeling S Bhat, K Palepu, L Hong, J Mao, T Ye, R Iyer, L Zhao, T Chen, S Vincoff, ... bioRxiv, 2023 | 1 | 2023 |
| Programmable Protein Stabilization with Language Model-Derived Peptide Guides P Chatterjee, L Hong, T Ye, T Wang, D Srijay, L Zhao, R Watson, S Vincoff, ... | | 2024 |
| Programmable Protein Stabilization with Language Model-Derived Peptide Guides L Hong, T Ye, TZ Wang, D Srijay, L Zhao, S Vincoff, T Chen, M DeLisa, ... ICLR 2024 Workshop on Generative and Experimental Perspectives for …, 0 | | |
