Nonlinear control of transcription through enhancer–promoter interactions J Zuin, G Roth, Y Zhan, J Cramard, J Redolfi, E Piskadlo, P Mach, ... Nature 604 (7906), 571-577, 2022 | 247 | 2022 |
Reciprocal insulation analysis of Hi-C data shows that TADs represent a functionally but not structurally privileged scale in the hierarchical folding of chromosomes Y Zhan, L Mariani, I Barozzi, EG Schulz, N Blüthgen, M Stadler, G Tiana, ... Genome research 27 (3), 479-490, 2017 | 200 | 2017 |
The dynamics of mRNA turnover revealed by single-molecule imaging in single cells I Horvathova, F Voigt, AV Kotrys, Y Zhan, CG Artus-Revel, J Eglinger, ... Molecular cell 68 (3), 615-625. e9, 2017 | 193 | 2017 |
Single-molecule imaging of mRNA localization and regulation during the integrated stress response JH Wilbertz, F Voigt, I Horvathova, G Roth, Y Zhan, JA Chao Molecular cell 73 (5), 946-958. e7, 2019 | 144 | 2019 |
Cohesin and CTCF control the dynamics of chromosome folding P Mach, PI Kos, Y Zhan, J Cramard, S Gaudin, J Tünnermann, E Marchi, ... Nature genetics 54 (12), 1907-1918, 2022 | 94 | 2022 |
HP1 drives de novo 3D genome reorganization in early Drosophila embryos F Zenk, Y Zhan, P Kos, E Löser, N Atinbayeva, M Schächtle, G Tiana, ... Nature 593 (7858), 289-293, 2021 | 91 | 2021 |
DamC reveals principles of chromatin folding in vivo without crosslinking and ligation J Redolfi, Y Zhan, C Valdes-Quezada, M Kryzhanovska, I Guerreiro, ... Nature structural & molecular biology 26 (6), 471-480, 2019 | 81 | 2019 |
The bipartite TAD organization of the X-inactivation center ensures opposing developmental regulation of Tsix and Xist JG Van Bemmel, R Galupa, C Gard, N Servant, C Picard, J Davies, ... Nature genetics 51 (6), 1024-1034, 2019 | 70 | 2019 |
A conserved noncoding locus regulates random monoallelic Xist expression across a topological boundary R Galupa, EP Nora, R Worsley-Hunt, C Picard, C Gard, JG van Bemmel, ... Molecular cell 77 (2), 352-367. e8, 2020 | 49 | 2020 |
Live-cell imaging and physical modeling reveal control of chromosome folding dynamics by cohesin and CTCF P Mach, PI Kos, Y Zhan, J Cramard, S Gaudin, J Tünnermann, E Marchi, ... BioRxiv, 2022.03. 03.482826, 2022 | 23 | 2022 |
deepBlink: threshold-independent detection and localization of diffraction-limited spots BT Eichenberger, YX Zhan, M Rempfler, L Giorgetti, JA Chao Nucleic Acids Research 49 (13), 7292-7297, 2021 | 22 | 2021 |
Modelling genome-wide topological associating domains in mouse embryonic stem cells Y Zhan, L Giorgetti, G Tiana Chromosome Research 25, 5-14, 2017 | 17 | 2017 |
MonteGrappa: an iterative Monte Carlo program to optimize biomolecular potentials in simplified models G Tiana, F Villa, Y Zhan, R Capelli, C Paissoni, P Sormanni, E Heard, ... Computer Physics Communications 186, 93-104, 2015 | 13 | 2015 |
Inversion of a topological domain leads to restricted changes in its gene expression and affects interdomain communication R Galupa, C Picard, N Servant, EP Nora, Y Zhan, JG van Bemmel, ... Development 149 (9), dev200568, 2022 | 11 | 2022 |
Effective model of loop extrusion predicts chromosomal domains M Crippa, Y Zhan, G Tiana Physical Review E 102 (3), 032414, 2020 | 9 | 2020 |
Bifractal nature of chromosome contact maps S Pigolotti, MH Jensen, Y Zhan, G Tiana Physical Review Research 2 (4), 043078, 2020 | 8 | 2020 |
Looping probability of random heteropolymers helps to understand the scaling properties of biopolymers Y Zhan, L Giorgetti, G Tiana Physical Review E 94 (3), 032402, 2016 | 7 | 2016 |
Locality of contacts determines the subdiffusion exponents in polymeric models of chromatin E Marchi, Y Zhan, G Tiana Physical Review E 107 (6), 064406, 2023 | 1 | 2023 |
Analyzing the Genome-Wide Distribution of Histone Marks by CUT&Tag in Drosophila Embryos F Zenk, F Cardamone, DA Ibarra Morales, N Atinbayeva, Y Zhan, N Iovino Polycomb Group Proteins: Methods and Protocols, 1-17, 2023 | 1 | 2023 |
Inheritance of H3K9 methylation regulates genome architecture in Drosophila early embryos N Atinbayeva, I Valent, F Zenk, E Loeser, M Rauer, S Herur, P Quarato, ... The EMBO Journal, 1-30, 2024 | | 2024 |