Stacks 2: Analytical methods for paired‐end sequencing improve RADseq‐based population genomics NC Rochette, AG Rivera‐Colón, JM Catchen Molecular ecology 28 (21), 4737-4754, 2019 | 867 | 2019 |
Simulation with RADinitio improves RADseq experimental design and sheds light on sources of missing data AG Rivera‐Colón, NC Rochette, JM Catchen Molecular ecology resources 21 (2), 363-378, 2021 | 46 | 2021 |
Removing the bad apples: A simple bioinformatic method to improve loci‐recovery in de novo RADseq data for non‐model organisms J Cerca, MF Maurstad, NC Rochette, AG Rivera‐Colón, N Rayamajhi, ... Methods in Ecology and Evolution 12 (5), 805-817, 2021 | 45 | 2021 |
Population genomics analysis with RAD, reprised: STACKS 2 AG Rivera-Colón, J Catchen | 32 | 2021 |
Incomplete lineage sorting and ancient admixture, and speciation without morphological change in ghost-worm cryptic species J Cerca, AG Rivera-Colón, MS Ferreira, M Ravinet, MD Nowak, ... PeerJ 9, e10896, 2021 | 17 | 2021 |
On the causes, consequences, and avoidance of PCR duplicates: Towards a theory of library complexity NC Rochette, AG Rivera‐Colón, J Walsh, TJ Sanger, ... Molecular Ecology Resources, 2022 | 16 | 2022 |
Sequence Analysis and Ontogenetic Expression Patterns of Cone Opsin Genes in the Bluefin Killifish (Lucania goodei) CH Chang, J Catchen, RL Moran, AG Rivera-Colón, YC Wang, RC Fuller Journal of Heredity 112 (4), 357-366, 2021 | 16 | 2021 |
The genomic basis of the plant island syndrome in Darwin’s giant daisies J Cerca, B Petersen, JM Lazaro-Guevara, A Rivera-Colón, S Birkeland, ... Nature communications 13 (1), 3729, 2022 | 15 | 2022 |
Genomics of secondarily temperate adaptation in the only non-Antarctic icefish AG Rivera-Colón, N Rayamajhi, BF Minhas, G Madrigal, KT Bilyk, V Yoon, ... Molecular biology and evolution 40 (3), msad029, 2023 | 8 | 2023 |
Numt Parser: Automated identification and removal of nuclear mitochondrial pseudogenes (numts) for accurate mitochondrial genome reconstruction in Panthera A de Flamingh, AG Rivera-Colón, TP Gnoske, JC Kerbis Peterhans, ... Journal of Heredity 114 (2), 120-130, 2023 | 7 | 2023 |
Multiple loci control eyespot number variation on the hindwings of Bicyclus anynana butterflies AG Rivera-Colón, EL Westerman, SM Van Belleghem, A Monteiro, ... Genetics 214 (4), 1059-1078, 2020 | 7* | 2020 |
Geographically diverse canid sampling provides novel insights into pre-industrial microbiomes K Yarlagadda, AJ Zachwieja, A de Flamingh, T Phungviwatnikul, ... Proceedings of the Royal Society B 289 (1974), 20220052, 2022 | 4 | 2022 |
Genomics and conservation: Guidance from training to analyses and applications LM Schiebelhut, AS Guillaume, A Kuhn, RM Schweizer, EE Armstrong, ... Molecular ecology resources, 2023 | 3 | 2023 |
Chromosome-Level Genome Assembly and Circadian Gene Repertoire of the Patagonia Blennie Eleginops maclovinus—The Closest Ancestral Proxy of Antarctic … CHC Cheng, AG Rivera-Colón, BF Minhas, L Wilson, N Rayamajhi, ... Genes 14 (6), 1196, 2023 | 2 | 2023 |
The genome of the cryopelagic Antarctic bald notothen, Trematomus borchgrevinki N Rayamajhi, AG Rivera-Colón, BF Minhas, CHC Cheng, JM Catchen bioRxiv, 2024.06. 17.599359, 2024 | | 2024 |
Ongoing introgression of a secondary sexual plumage trait in a stable avian hybrid zone KM Long, AG Rivera-Colón, KFP Bennett, JM Catchen, MJ Braun, ... Evolution, qpae076, 2024 | | 2024 |
Genomic analysis supports Cape Lion population connectivity prior to colonial eradication and extinction A de Flamingh, TP Gnoske, AG Rivera-Colón, VA Simeonovski, ... Journal of Heredity 115 (2), 155-165, 2024 | | 2024 |
Comparative and evolutionary genomics of secondarily temperate adaptation in a non-Antarctic icefish AG Rivera-Colon University of Illinois at Urbana-Champaign, 2022 | | 2022 |