| Interpreting cancer genomes using systematic host network perturbations by tumour virus proteins O Rozenblatt-Rosen, RC Deo, M Padi, G Adelmant, MA Calderwood, ... Nature 487 (7408), 491-495, 2012 | 418 | 2012 |
| Sequence-based estimation of minisatellite and microsatellite repeat variability M Legendre, N Pochet, T Pak, KJ Verstrepen Genome research 17 (12), 1787-1796, 2007 | 242 | 2007 |
| Epigenomic characterization of Clostridioides difficile finds a conserved DNA methyltransferase that mediates sporulation and pathogenesis PH Oliveira, JW Ribis, EM Garrett, D Trzilova, A Kim, O Sekulovic, ... Nature microbiology 5 (1), 166-180, 2020 | 88 | 2020 |
| Genome Plasticity of agr-Defective Staphylococcus aureus during Clinical Infection DR Altman, MJ Sullivan, KI Chacko, D Balasubramanian, TR Pak, ... Infection and immunity 86 (10), 10.1128/iai. 00331-18, 2018 | 62 | 2018 |
| Comprehensive innate immune profiling of chikungunya virus infection in pediatric cases D Michlmayr, TR Pak, AH Rahman, EAD Amir, EY Kim, S Kim‐Schulze, ... Molecular systems biology 14 (8), e7862, 2018 | 61 | 2018 |
| Morphine via nitric oxide modulates β-amyloid metabolism: a novel protective mechanism for Alzheimer’s disease T PakABCDEF, P CadetADEF, KJ MantioneAB, GB StefanoEG Med Sci Monit 11 (10), 366, 2005 | 56 | 2005 |
| How next-generation sequencing and multiscale data analysis will transform infectious disease management TR Pak, A Kasarskis Clinical Infectious Diseases 61 (11), 1695-1702, 2015 | 54 | 2015 |
| High-dimensional CyTOF analysis of dengue virus–infected human DCs reveals distinct viral signatures RE Hamlin, A Rahman, TR Pak, K Maringer, I Mena, D Bernal-Rubio, ... JCI insight 2 (13), 2017 | 33 | 2017 |
| Whole-genome sequencing identifies emergence of a quinolone resistance mutation in a case of Stenotrophomonas maltophilia bacteremia TR Pak, DR Altman, O Attie, R Sebra, CL Hamula, M Lewis, G Deikus, ... Antimicrobial agents and chemotherapy 59 (11), 7117-7120, 2015 | 30 | 2015 |
| A complete genome screening program of clinical methicillin-resistant Staphylococcus aureus isolates identifies the origin and progression of a neonatal intensive care unit … MJ Sullivan, DR Altman, KI Chacko, B Ciferri, E Webster, TR Pak, ... Journal of clinical microbiology 57 (12), 10.1128/jcm. 01261-19, 2019 | 23 | 2019 |
| Genetic basis of emerging vancomycin, linezolid, and daptomycin heteroresistance in a case of persistent Enterococcus faecium bacteremia KI Chacko, MJ Sullivan, C Beckford, DR Altman, B Ciferri, TR Pak, ... Antimicrobial Agents and Chemotherapy 62 (4), 10.1128/aac. 02007-17, 2018 | 23 | 2018 |
| ChromoZoom: a flexible, fluid, web-based genome browser TR Pak, FP Roth Bioinformatics 29 (3), 384-386, 2013 | 23 | 2013 |
| Real-time investigation of a large nosocomial influenza A outbreak informed by genomic epidemiology W Javaid, J Ehni, AS Gonzalez-Reiche, JM Carreño, E Hirsch, J Tan, ... Clinical Infectious Diseases 73 (11), e4375-e4383, 2021 | 20 | 2021 |
| Genomic confirmation of vancomycin-resistant Enterococcus transmission from deceased donor to liver transplant recipient A Bashir, O Attie, M Sullivan, R Sebra, KV Singh, D Altman, T Pak, J Dutta, ... PloS one 12 (3), e0170449, 2017 | 20 | 2017 |
| Why clinical trials are terminated TR Pak, MD Rodriguez, FP Roth BioRxiv, 021543, 2015 | 18 | 2015 |
| PathoSPOT genomic epidemiology reveals under-the-radar nosocomial outbreaks A Berbel Caban, TR Pak, A Obla, AC Dupper, KI Chacko, L Fox, A Mills, ... Genome Medicine 12, 1-11, 2020 | 16 | 2020 |
| Discontinuation of universal admission testing for SARS-CoV-2 and hospital-onset COVID-19 infections in England and Scotland TR Pak, C Rhee, R Wang, M Klompas JAMA Internal Medicine 183 (8), 877-880, 2023 | 13 | 2023 |
| Risk of misleading conclusions in observational studies of time-to-antibiotics and mortality in suspected sepsis TR Pak, J Young, CS McKenna, A Agan, L DelloStritto, MR Filbin, S Dutta, ... Clinical Infectious Diseases 77 (11), 1534-1543, 2023 | 11 | 2023 |
| Estimating Local Costs Associated With Clostridium difficile Infection Using Machine Learning and Electronic Medical Records TR Pak, KI Chacko, T O’Donnell, SS Huprikar, H van Bakel, A Kasarskis, ... infection control & hospital epidemiology 38 (12), 1478-1486, 2017 | 9 | 2017 |
| Timing and spectrum of antibiotic treatment for suspected sepsis and septic shock: why so controversial? TR Pak, C Rhee, M Klompas Infectious Disease Clinics of North America 36 (4), 719-733, 2022 | 7 | 2022 |
