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Parveen Kumar
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G&T-seq: parallel sequencing of single-cell genomes and transcriptomes
IC Macaulay, W Haerty, P Kumar, YI Li, TX Hu, MJ Teng, M Goolam, ...
Nature methods 12 (6), 519-522, 2015
8062015
Mouse model of chromosome mosaicism reveals lineage-specific depletion of aneuploid cells and normal developmental potential
H Bolton, SJL Graham, N Van der Aa, P Kumar, K Theunis, ...
Nature communications 7 (1), 11165, 2016
4412016
Single-cell analysis of human glioma and immune cells identifies S100A4 as an immunotherapy target
N Abdelfattah, P Kumar, C Wang, JS Leu, WF Flynn, R Gao, DS Baskin, ...
Nature communications 13 (1), 767, 2022
2092022
Concurrent whole-genome haplotyping and copy-number profiling of single cells
MZ Esteki, E Dimitriadou, L Mateiu, C Melotte, N Van der Aa, P Kumar, ...
The American Journal of Human Genetics 96 (6), 894-912, 2015
1792015
Single-cell paired-end genome sequencing reveals structural variation per cell cycle
T Voet, P Kumar, P Van Loo, SL Cooke, J Marshall, ML Lin, ...
Nucleic acids research 41 (12), 6119-6138, 2013
1722013
Separation and parallel sequencing of the genomes and transcriptomes of single cells using G&T-seq
IC Macaulay, MJ Teng, W Haerty, P Kumar, CP Ponting, T Voet
Nature protocols 11 (11), 2081-2103, 2016
1632016
TET2 deficiency causes germinal center hyperplasia, impairs plasma cell differentiation, and promotes B-cell lymphomagenesis
PM Dominguez, H Ghamlouch, W Rosikiewicz, P Kumar, W Béguelin, ...
Cancer discovery 8 (12), 1632-1653, 2018
1542018
Tracing the origin of disseminated tumor cells in breast cancer using single-cell sequencing
J Demeulemeester, P Kumar, EK Møller, S Nord, DC Wedge, A Peterson, ...
Genome biology 17, 1-15, 2016
882016
Zinc-finger transcription factors are associated with guanine quadruplex motifs in human, chimpanzee, mouse and rat promoters genome-wide
P Kumar, VK Yadav, A Baral, P Kumar, D Saha, S Chowdhury
Nucleic acids research 39 (18), 8005-8016, 2011
762011
Genome-wide copy number profiling of single cells in S-phase reveals DNA-replication domains
N Van der Aa, J Cheng, L Mateiu, MZ Esteki, P Kumar, E Dimitriadou, ...
Nucleic acids research, 2013
742013
Small chromosomal regions position themselves autonomously according to their chromatin class
HJG Van De Werken, JC Haan, Y Feodorova, D Bijos, A Weuts, K Theunis, ...
Genome Research 27 (6), 922-933, 2017
442017
Next-generation sequencing of disseminated tumor cells
EK Møller, P Kumar, T Voet, A Peterson, P Van Loo, RR Mathiesen, ...
Frontiers in oncology 3, 320, 2013
432013
Metastases suppressor NME2 associates with telomere ends and telomerase and reduces telomerase activity within cells
A Kar, D Saha, G Purohit, A Singh, P Kumar, VK Yadav, P Kumar, ...
Nucleic acids research 40 (6), 2554-2565, 2012
342012
Meander: visually exploring the structural variome using space-filling curves
GA Pavlopoulos, P Kumar, A Sifrim, R Sakai, ML Lin, T Voet, Y Moreau, ...
Nucleic acids research 41 (11), e118-e118, 2013
102013
A computational method to aid the design and analysis of single cell RNA-seq experiments for cell type identification
D Abrams, P Kumar, RKM Karuturi, J George
BMC bioinformatics 20, 1-6, 2019
92019
How to analyse a single blastomere? Application of whole-genome technologies: micro-arrays and next generation sequencing
P Kumar, M Zamani Esteki, N Van der Aa, T Voet
Cambridge University Press, 2013
72013
HiVA: an integrative wet-and dry-lab platform for haplotype and copy number analysis of single-cell genomes
MZ Esteki, A Ardeshirdavani, D Alcaide, H Masset, J Ding, A Sifrim, ...
bioRxiv, 564914, 2019
52019
Genome informatics
AK Kesarwani, A Malhotra, A Srivastava, G Ananda, H Ashoor, P Kumar, ...
Academic Press, 2019
22019
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