G&T-seq: parallel sequencing of single-cell genomes and transcriptomes IC Macaulay, W Haerty, P Kumar, YI Li, TX Hu, MJ Teng, M Goolam, ... Nature methods 12 (6), 519-522, 2015 | 806 | 2015 |
Mouse model of chromosome mosaicism reveals lineage-specific depletion of aneuploid cells and normal developmental potential H Bolton, SJL Graham, N Van der Aa, P Kumar, K Theunis, ... Nature communications 7 (1), 11165, 2016 | 441 | 2016 |
Single-cell analysis of human glioma and immune cells identifies S100A4 as an immunotherapy target N Abdelfattah, P Kumar, C Wang, JS Leu, WF Flynn, R Gao, DS Baskin, ... Nature communications 13 (1), 767, 2022 | 209 | 2022 |
Concurrent whole-genome haplotyping and copy-number profiling of single cells MZ Esteki, E Dimitriadou, L Mateiu, C Melotte, N Van der Aa, P Kumar, ... The American Journal of Human Genetics 96 (6), 894-912, 2015 | 179 | 2015 |
Single-cell paired-end genome sequencing reveals structural variation per cell cycle T Voet, P Kumar, P Van Loo, SL Cooke, J Marshall, ML Lin, ... Nucleic acids research 41 (12), 6119-6138, 2013 | 172 | 2013 |
Separation and parallel sequencing of the genomes and transcriptomes of single cells using G&T-seq IC Macaulay, MJ Teng, W Haerty, P Kumar, CP Ponting, T Voet Nature protocols 11 (11), 2081-2103, 2016 | 163 | 2016 |
TET2 deficiency causes germinal center hyperplasia, impairs plasma cell differentiation, and promotes B-cell lymphomagenesis PM Dominguez, H Ghamlouch, W Rosikiewicz, P Kumar, W Béguelin, ... Cancer discovery 8 (12), 1632-1653, 2018 | 154 | 2018 |
Tracing the origin of disseminated tumor cells in breast cancer using single-cell sequencing J Demeulemeester, P Kumar, EK Møller, S Nord, DC Wedge, A Peterson, ... Genome biology 17, 1-15, 2016 | 88 | 2016 |
Zinc-finger transcription factors are associated with guanine quadruplex motifs in human, chimpanzee, mouse and rat promoters genome-wide P Kumar, VK Yadav, A Baral, P Kumar, D Saha, S Chowdhury Nucleic acids research 39 (18), 8005-8016, 2011 | 76 | 2011 |
Genome-wide copy number profiling of single cells in S-phase reveals DNA-replication domains N Van der Aa, J Cheng, L Mateiu, MZ Esteki, P Kumar, E Dimitriadou, ... Nucleic acids research, 2013 | 74 | 2013 |
Small chromosomal regions position themselves autonomously according to their chromatin class HJG Van De Werken, JC Haan, Y Feodorova, D Bijos, A Weuts, K Theunis, ... Genome Research 27 (6), 922-933, 2017 | 44 | 2017 |
Next-generation sequencing of disseminated tumor cells EK Møller, P Kumar, T Voet, A Peterson, P Van Loo, RR Mathiesen, ... Frontiers in oncology 3, 320, 2013 | 43 | 2013 |
Metastases suppressor NME2 associates with telomere ends and telomerase and reduces telomerase activity within cells A Kar, D Saha, G Purohit, A Singh, P Kumar, VK Yadav, P Kumar, ... Nucleic acids research 40 (6), 2554-2565, 2012 | 34 | 2012 |
Meander: visually exploring the structural variome using space-filling curves GA Pavlopoulos, P Kumar, A Sifrim, R Sakai, ML Lin, T Voet, Y Moreau, ... Nucleic acids research 41 (11), e118-e118, 2013 | 10 | 2013 |
A computational method to aid the design and analysis of single cell RNA-seq experiments for cell type identification D Abrams, P Kumar, RKM Karuturi, J George BMC bioinformatics 20, 1-6, 2019 | 9 | 2019 |
How to analyse a single blastomere? Application of whole-genome technologies: micro-arrays and next generation sequencing P Kumar, M Zamani Esteki, N Van der Aa, T Voet Cambridge University Press, 2013 | 7 | 2013 |
HiVA: an integrative wet-and dry-lab platform for haplotype and copy number analysis of single-cell genomes MZ Esteki, A Ardeshirdavani, D Alcaide, H Masset, J Ding, A Sifrim, ... bioRxiv, 564914, 2019 | 5 | 2019 |
Genome informatics AK Kesarwani, A Malhotra, A Srivastava, G Ananda, H Ashoor, P Kumar, ... Academic Press, 2019 | 2 | 2019 |