Canonical sampling through velocity rescaling G Bussi, D Donadio, M Parrinello Journal of Chemical Physics 126, 014101, 2007 | 14808 | 2007 |
PLUMED 2: New feathers for an old bird GA Tribello, M Bonomi, D Branduardi, C Camilloni, G Bussi Computer Physics Communications 185 (2), 604-613, 2014 | 2848 | 2014 |
Well-tempered metadynamics: a smoothly converging and tunable free-energy method A Barducci, G Bussi, M Parrinello Physical review letters 100 (2), 020603, 2008 | 2800 | 2008 |
PLUMED: A portable plugin for free-energy calculations with molecular dynamics M Bonomi, D Branduardi, G Bussi, C Camilloni, D Provasi, P Raiteri, ... Computer Physics Communications 180 (10), 1961-1972, 2009 | 1738 | 2009 |
Promoting transparency and reproducibility in enhanced molecular simulations M Bonomi, G Bussi, C Camilloni, GA Tribello, P Banáš, A Barducci, ... Nature methods 16 (8), 670-673, 2019 | 680 | 2019 |
Free-energy landscape for β hairpin folding from combined parallel tempering and metadynamics G Bussi, FL Gervasio, A Laio, M Parrinello Journal of the American Chemical Society 128 (41), 13435-13441, 2006 | 576 | 2006 |
Equilibrium free energies from nonequilibrium metadynamics G Bussi, A Laio, M Parrinello Physical review letters 96 (9), 090601, 2006 | 522 | 2006 |
Enhanced sampling in molecular dynamics using metadynamics, replica-exchange, and temperature-acceleration C Abrams, G Bussi Entropy 16 (1), 163-199, 2014 | 476 | 2014 |
Using metadynamics to explore complex free-energy landscapes G Bussi, A Laio Nature Reviews Physics 2, 200–212, 2020 | 475 | 2020 |
RNA structural dynamics as captured by molecular simulations: a comprehensive overview J Šponer, G Bussi, M Krepl, P Banáš, S Bottaro, RA Cunha, A Gil-Ley, ... Chemical reviews 118 (8), 4177-4338, 2018 | 444 | 2018 |
Accurate sampling using Langevin dynamics G Bussi, M Parrinello Physical Review E—Statistical, Nonlinear, and Soft Matter Physics 75 (5 …, 2007 | 417 | 2007 |
Isothermal-isobaric molecular dynamics using stochastic velocity rescaling G Bussi, T Zykova-Timan, M Parrinello The Journal of chemical physics 130 (7), 074101, 2009 | 398 | 2009 |
Excitons in carbon nanotubes: An ab initio symmetry-based approach E Chang, G Bussi, A Ruini, E Molinari Physical review letters 92 (19), 196401, 2004 | 360 | 2004 |
Colored-noise thermostats à la carte M Ceriotti, G Bussi, M Parrinello Journal of Chemical Theory and Computation 6 (4), 1170-1180, 2010 | 312 | 2010 |
Metadynamics with adaptive Gaussians D Branduardi, G Bussi, M Parrinello Journal of chemical theory and computation 8 (7), 2247-2254, 2012 | 287 | 2012 |
Nuclear quantum effects in solids using a colored-noise thermostat M Ceriotti, G Bussi, M Parrinello Physical review letters 103 (3), 030603, 2009 | 278 | 2009 |
Hamiltonian replica exchange in GROMACS: a flexible implementation G Bussi Molecular Physics 112 (3-4), 379-384, 2014 | 250 | 2014 |
Langevin equation with colored noise for constant-temperature molecular dynamics simulations M Ceriotti, G Bussi, M Parrinello Physical review letters 102 (2), 20601, 2009 | 243 | 2009 |
Solid state effects on exciton states and optical properties of PPV A Ruini, MJ Caldas, G Bussi, E Molinari Physical review letters 88 (20), 206403, 2002 | 211 | 2002 |
Pressure control using stochastic cell rescaling M Bernetti, G Bussi The Journal of Chemical Physics 153 (11), 114107, 2020 | 177 | 2020 |