| Analyses of non-coding somatic drivers in 2,658 cancer whole genomes E Rheinbay, MM Nielsen, F Abascal, JA Wala, O Shapira, G Tiao, ... Nature 578 (7793), 102-111, 2020 | 565 | 2020 |
| CellBox: interpretable machine learning for perturbation biology with application to the design of cancer combination therapy B Yuan, C Shen, A Luna, A Korkut, DS Marks, J Ingraham, C Sander Cell systems 12 (2), 128-140. e4, 2021 | 113 | 2021 |
| Discovering in vivo cytokine-eQTL interactions from a lupus clinical trial EE Davenport, T Amariuta, M Gutierrez-Arcelus, K Slowikowski, ... Genome biology 19, 1-15, 2018 | 41 | 2018 |
| Disulfiram use is associated with lower risk of COVID-19: A retrospective cohort study N Fillmore, S Bell, C Shen, V Nguyen, J La, M Dubreuil, J Strymish, ... PloS one 16 (10), e0259061, 2021 | 40 | 2021 |
| scPerturb: harmonized single-cell perturbation data S Peidli, TD Green, C Shen, T Gross, J Min, S Garda, B Yuan, ... Nature Methods, 1-10, 2024 | 17 | 2024 |
| Molecular response to PARP1 inhibition in ovarian cancer cells as determined by mass spectrometry based proteomics A Franz, F Coscia, C Shen, L Charaoui, M Mann, C Sander Journal of Ovarian Research 14 (1), 1-14, 2021 | 9 | 2021 |
| scPerturb: Information Resource for Harmonized Single-Cell Perturbation Data TD Green, S Peidli, C Shen, T Gross, J Min, S Garda, JP Taylor-King, ... NeurIPS 2022 Workshop on Learning Meaningful Representations of Life, 0 | 4* | |
| Improved statistical benchmarking of digital pathology models using pairwise frames evaluation Y Gerardin, J Shamshoian, J Shen, N Le, J Prezioso, J Abel, I Finberg, ... arXiv preprint arXiv:2306.04709, 2023 | 3 | 2023 |
| Inference of cell dynamics on perturbation data using adjoint sensitivity W Ji, B Yuan, C Shen, A Regev, C Sander, S Deng arXiv preprint arXiv:2104.06467, 2021 | 2 | 2021 |
| Application of an interpretable graph neural network to predict gene expression signatures associated with tertiary lymphoid structures in histopathological images C Shen, C Schlager, D Rajan, M Pouryahya, M Lin, V Mountain, ... Cancer Research 82 (12_Supplement), 1922-1922, 2022 | 1 | 2022 |
| 122 Quantification of tumor infiltrating lymphocytes (TILs) from pathology slides reflects molecular immune phenotypes C Shen, S Nofallah, J Conway, C Parmar, MG Drage, F Najdawi, ... Journal for ImmunoTherapy of Cancer 11 (Suppl 1), 2023 | | 2023 |
