| Genome-scale identification of essential metabolic processes for targeting the Plasmodium liver stage RR Stanway, E Bushell, A Chiappino-Pepe, M Roques, T Sanderson, ... Cell 179 (5), 1112-1128. e26, 2019 | 110 | 2019 |
| Enhanced flux prediction by integrating relative expression and relative metabolite abundance into thermodynamically consistent metabolic models V Pandey, N Hadadi, V Hatzimanikatis PLoS computational biology 15 (5), e1007036, 2019 | 77 | 2019 |
| Multi-omic profiles of human non-alcoholic fatty liver disease tissue highlight heterogenic phenotypes W Wruck, K Kashofer, S Rehman, A Daskalaki, D Berg, E Gralka, ... Scientific data 2 (1), 1-10, 2015 | 48 | 2015 |
| Regulators of male and female sexual development are critical for the transmission of a malaria parasite AJC Russell, T Sanderson, E Bushell, AM Talman, B Anar, G Girling, ... Cell host & microbe 31 (2), 305-319. e10, 2023 | 43 | 2023 |
| Mechanistic insights into bacterial metabolic reprogramming from omics-integrated genome-scale models N Hadadi, V Pandey, A Chiappino-Pepe, M Morales, H Gallart-Ayala, ... NPJ systems biology and applications 6 (1), 1, 2020 | 40 | 2020 |
| Integration of metabolic, regulatory and signaling networks towards analysis of perturbation and dynamic responses A Chiappino-Pepe, V Pandey, M Ataman, V Hatzimanikatis Current Opinion in Systems Biology 2, 59-66, 2017 | 20 | 2017 |
| Modeling of miRNA and drug action in the EGFR signaling pathway J Li, V Pandey, T Kessler, H Lehrach, C Wierling PloS one 7 (1), e30140, 2012 | 17 | 2012 |
| Comparative analysis and modeling of the severity of steatohepatitis in DDC-treated mouse strains V Pandey, M Sultan, K Kashofer, M Ralser, V Amstislavskiy, J Starmann, ... PLoS One 9 (10), e111006, 2014 | 14 | 2014 |
| Investigating the deregulation of metabolic tasks via Minimum Network Enrichment Analysis (MiNEA) as applied to nonalcoholic fatty liver disease using mouse and human omics data V Pandey, V Hatzimanikatis PLoS computational biology 15 (4), e1006760, 2019 | 11 | 2019 |
| TEX-FBA: A constraint-based method for integrating gene expression, thermodynamics, and metabolomics data into genome-scale metabolic models V Pandey, DH Gardiol, A Chiappino-Pepe, V Hatzimanikatis BioRxiv, 536235, 2019 | 9 | 2019 |
| Genome reconstructions of metabolism of Plasmodium RBC and liver stages A Chiappino-Pepe, V Pandey, O Billker Current Opinion in Microbiology 63, 259-266, 2021 | 2 | 2021 |
| Systematic screens for fertility genes essential for malaria parasite transmission reveal conserved aspects of sex in a divergent eukaryote C Sayers, V Pandey, A Balakrishnana, K Michie, D Svedberg, M Hunziker, ... bioRxiv, 2023.12. 25.572958, 2023 | 1 | 2023 |
| Extracellular ATP is an environmental cue in bacteria S Tronnet, V Pandey, M Lloret-Berrocal, M Perez-del-Pozo, N Söderholm, ... bioRxiv, 2024.01. 24.577065, 2024 | | 2024 |
| Extracellular ATP is a signalling molecule in bacteria S Tronnet, V Pandey, M Lloret-Berrocal, M Pérez-del-Pozo, N Söderholm, ... | | 2024 |
| A CRISPR homing screen finds a chloroquine resistance transporter-like protein of the Plasmodium oocyst essential for mosquito transmission of malaria A Balakrishnan, M Hunziker, P Tiwary, V Pandey, D Drew, O Billker bioRxiv, 2024.06. 02.597011, 2024 | | 2024 |
| Studying cancer cells phenotypes integrating omics data in human reduced genome-scale metabolic models. M Masid Barcon, VK Pandey, V Hatzimanikatis European Conference on Computational Biology (ECCB) 2018, 2018 | | 2018 |
| REMI: Constraint-based method for integrating relative expression and relative metabolite levels into a thermodynamically consistent metabolic model V Pandey, V Hatzimanikatis | | 2017 |
| Context-specific cell signaling analysis using logic framework V Pandey, V Hatzimanikatis | | 2017 |
| Integrating Transcriptomic Data with Thermodynamically Consistent Metabolic Models DF Hernandez Gardiol, VK Pandey 4th Conference on Constraint-Based Reconstruction and Analysis (COBRA 2015), 2015 | | 2015 |
| Metabolic modeling of different degrees of steatohepatitis in mice V Pandey | | 2014 |
