Integrated analysis of multimodal single-cell data Y Hao, S Hao, E Andersen-Nissen, WM Mauck, S Zheng, A Butler, MJ Lee, ... Cell 184 (13), 3573-3587. e29, 2021 | 7362 | 2021 |
Piercing the dark matter: bioinformatics of long-range sequencing and mapping FJ Sedlazeck, H Lee, CA Darby, MC Schatz Nature Reviews Genetics 19 (6), 329-346, 2018 | 482 | 2018 |
Xenolog classification CA Darby, M Stolzer, PJ Ropp, D Barker, D Durand Bioinformatics 33 (5), 640-649, 2017 | 51 | 2017 |
LRSim: a linked-reads simulator generating insights for better genome partitioning R Luo, FJ Sedlazeck, CA Darby, SM Kelly, MC Schatz Computational and structural biotechnology journal 15, 478-484, 2017 | 42 | 2017 |
Clonal hematopoiesis before, during, and after human spaceflight N Mencia-Trinchant, MJ MacKay, C Chin, E Afshinnekoo, J Foox, ... Cell reports 33 (10), 2020 | 40 | 2020 |
Vargas: heuristic-free alignment for assessing linear and graph read aligners CA Darby, R Gaddipati, MC Schatz, B Langmead Bioinformatics 36 (12), 3712-3718, 2020 | 21 | 2020 |
scHLAcount: allele-specific HLA expression from single-cell gene expression data CA Darby, MJT Stubbington, PJ Marks, Á Martínez Barrio, IT Fiddes Bioinformatics 36 (12), 3905-3906, 2020 | 19 | 2020 |
Integrated analysis of multimodal single-cell data. bioRxiv Y Hao, S Hao, E Andersen-Nissen, WM Mauck, S Zheng, A Butler, MJ Lee, ... Preprint]. doi 10 (2020.08), 27.271130, 2020 | 13 | 2020 |
Samovar: single-sample mosaic single-nucleotide variant calling with linked reads CA Darby, JR Fitch, PJ Brennan, BJ Kelly, N Bir, V Magrini, J Leonard, ... Iscience 18, 1-10, 2019 | 8 | 2019 |
Computational methods addressing genetic variation in next-generation sequencing data CA Darby Johns Hopkins University, 2020 | | 2020 |
Integrated analysis of multimodal single-cell data (preprint) Y Hao, S Hao, E Andersen-Nissen, WM Mauck, S Zheng, A Butler, MJ Lee, ... | | 2020 |