| WebLogo: a sequence logo generator GE Crooks, G Hon, JM Chandonia, SE Brenner Genome research 14 (6), 1188-1190, 2004 | 12861 | 2004 |
| SCOP: a structural classification of proteins database for the investigation of sequences and structures AG Murzin, SE Brenner, T Hubbard, C Chothia Journal of molecular biology 247 (4), 536-540, 1995 | 8393 | 1995 |
| The transcriptional landscape of the mammalian genome P Carninci, T Kasukawa, S Katayama, J Gough, MC Frith, N Maeda, ... Science 309 (5740), 1559-1563, 2005 | 4091 | 2005 |
| The Bioperl toolkit: Perl modules for the life sciences JE Stajich, D Block, K Boulez, SE Brenner, SA Chervitz, C Dagdigian, ... Genome research 12 (10), 1611-1618, 2002 | 1978 | 2002 |
| The developmental transcriptome of Drosophila melanogaster BR Graveley, AN Brooks, JW Carlson, MO Duff, JM Landolin, L Yang, ... Nature 471 (7339), 473-479, 2011 | 1691 | 2011 |
| Evidence for the widespread coupling of alternative splicing and nonsense-mediated mRNA decay in humans BP Lewis, RE Green, SE Brenner Proceedings of the National Academy of Sciences 100 (1), 189-192, 2003 | 1305 | 2003 |
| KBase: the United States department of energy systems biology knowledgebase AP Arkin, RW Cottingham, CS Henry, NL Harris, RL Stevens, S Maslov, ... Nature biotechnology 36 (7), 566-569, 2018 | 1213 | 2018 |
| SCOP database in 2004: refinements integrate structure and sequence family data A Andreeva, D Howorth, SE Brenner, TJP Hubbard, C Chothia, AG Murzin Nucleic acids research 32 (suppl_1), D226-D229, 2004 | 1198 | 2004 |
| Data growth and its impact on the SCOP database: new developments A Andreeva, D Howorth, JM Chandonia, SE Brenner, TJP Hubbard, ... Nucleic acids research 36 (suppl_1), D419-D425, 2007 | 1138 | 2007 |
| Identification of Functional Elements and Regulatory Circuits by Drosophila modENCODE modENCODE Consortium, S Roy, J Ernst, PV Kharchenko, P Kheradpour, ... Science 330 (6012), 1787-1797, 2010 | 1087 | 2010 |
| A large-scale evaluation of computational protein function prediction P Radivojac, WT Clark, TR Oron, AM Schnoes, T Wittkop, A Sokolov, ... Nature methods 10 (3), 221-227, 2013 | 1072 | 2013 |
| Errors in genome annotation SE Brenner Trends in Genetics 15 (4), 132-133, 1999 | 1062 | 1999 |
| The Sorcerer II Global Ocean Sampling Expedition: Expanding the Universe of Protein Families S Yooseph, G Sutton, DB Rusch, AL Halpern, SJ Williamson, ... PLoS biology 5 (3), e16, 2007 | 1015 | 2007 |
| Unlocking the secrets of the genome SE Celniker, et al. Nature 459, 927-930, 2009 | 970 | 2009 |
| SCOP: a structural classification of proteins database L Lo Conte, B Ailey, TJP Hubbard, SE Brenner, AG Murzin, C Chothia Nucleic acids research 28 (1), 257-259, 2000 | 904 | 2000 |
| Biases in Illumina transcriptome sequencing caused by random hexamer priming KD Hansen, SE Brenner, S Dudoit Nucleic acids research 38 (12), e131-e131, 2010 | 896 | 2010 |
| SCOPe: Structural Classification of Proteins—extended, integrating SCOP and ASTRAL data and classification of new structures NK Fox, SE Brenner, JM Chandonia Nucleic acids research 42 (D1), D304-D309, 2014 | 811 | 2014 |
| Unproductive splicing of SR genes associated with highly conserved and ultraconserved DNA elements LF Lareau, M Inada, RE Green, JC Wengrod, SE Brenner Nature 446 (7138), 926-929, 2007 | 734 | 2007 |
| Assessing sequence comparison methods with reliable structurally identified distant evolutionary relationships SE Brenner, C Chothia, TJP Hubbard Proceedings of the National Academy of Sciences 95 (11), 6073-6078, 1998 | 731 | 1998 |
| The ASTRAL compendium in 2004 JM Chandonia, G Hon, NS Walker, L Lo Conte, P Koehl, M Levitt, ... Nucleic acids research 32 (suppl_1), D189-D192, 2004 | 725 | 2004 |
