Mass spectrometry-based metabolomics: A guide for annotation, quantification and best reporting practices S Alseekh, A Aharoni, Y Brotman, K Contrepois, J D’Auria, J Ewald, ... Nature methods 18 (7), 747-756, 2021 | 538 | 2021 |
Differential transcriptional responses to Ebola and Marburg virus infection in bat and human cells M Hölzer, V Krähling, F Amman, E Barth, SH Bernhart, VAO Carmelo, ... Scientific reports 6 (1), 34589, 2016 | 65 | 2016 |
Trends in mathematical modeling of host–pathogen interactions J Ewald, P Sieber, R Garde, SN Lang, S Schuster, B Ibrahim Cellular and Molecular Life Sciences 77, 467-480, 2020 | 50 | 2020 |
Optimality principles reveal a complex interplay of intermediate toxicity and kinetic efficiency in the regulation of prokaryotic metabolism J Ewald, M Bartl, T Dandekar, C Kaleta PLoS computational biology 13 (2), e1005371, 2017 | 24 | 2017 |
Modelling the host–pathogen interactions of macrophages and Candida albicans using Game Theory and dynamic optimization S Dühring, J Ewald, S Germerodt, C Kaleta, T Dandekar, S Schuster Journal of The Royal Society Interface 14 (132), 20170095, 2017 | 22 | 2017 |
Modeling the energy metabolism in immune cells S Schuster, J Ewald, C Kaleta Current Opinion in Biotechnology 68, 282-291, 2021 | 17 | 2021 |
Deciphering the regulation of metabolism with dynamic optimization: an overview of recent advances J Ewald, M Bartl, C Kaleta Biochemical Society Transactions 45 (4), 1035-1043, 2017 | 17 | 2017 |
Optimal programs of pathway control: dissecting the influence of pathway topology and feedback inhibition on pathway regulation GM de Hijas-Liste, E Balsa-Canto, J Ewald, M Bartl, P Li, JR Banga, ... BMC bioinformatics 16 (1), 1-13, 2015 | 17 | 2015 |
Modelling population dynamics in a unicellular social organism community using a minimal model and evolutionary game theory R Garde, J Ewald, ÁT Kovács, S Schuster Open Biology 10 (11), 200206, 2020 | 13 | 2020 |
Dynamic optimization reveals alveolar epithelial cells as key mediators of host defense in invasive aspergillosis J Ewald, F Rivieccio, L Radosa, S Schuster, AA Brakhage, C Kaleta PLoS computational biology 17 (12), e1009645, 2021 | 12 | 2021 |
Footprints of optimal protein assembly strategies in the operonic structure of prokaryotes J Ewald, M Kötzing, M Bartl, C Kaleta Metabolites 5 (2), 252-269, 2015 | 6 | 2015 |
Optimizing defence, counter-defence and counter-counter defence in parasitic and trophic interactions--A modelling study S Schuster, J Ewald, T Dandekar, S Dühring arXiv preprint arXiv:1907.04820, 2019 | 5 | 2019 |
Differential transcriptional responses to Ebola and Marburg virus infection in bat and human cells. Sci Rep 6: 34589 M Hölzer, V Krähling, F Amman, E Barth, SH Bernhart, VAO Carmelo, ... | 3 | 2016 |
Corrigendum: Differential transcriptional responses to Ebola and Marburg virus infection in bat and human cells M Hölzer, V Krähling, F Amman, E Barth, SH Bernhart, VAO Carmelo, ... Scientific reports 7, 2017 | 2 | 2017 |
Federated Learning on Transcriptomic Data: Model Quality and Performance Trade-Offs A Hannemann, J Ewald, L Seeger, E Buchmann International Conference on Computational Science, 279-293, 2024 | 1 | 2024 |
Agent-based modelling of iron cycling bacteria provides a framework for testing alternative environmental conditions and modes of action A Then, J Ewald, N Söllner, RE Cooper, K Küsel, B Ibrahim, S Schuster Royal Society Open Science 9 (5), 211553, 2022 | 1 | 2022 |
The landscape of toxic intermediates in the metabolic networks of pathogenic fungi reveals targets for antifungal drugs J Ewald, PM Jansen, S Brunke, D Hiller, CH Luther, H González-Díaz, ... bioRxiv, 2021.09. 05.459012, 2021 | | 2021 |
Computational methods to decipher the evolution of fungal virulence with special reference to Candida, Lichtheimia and Aspergillus (FungiNet Project B1) SK Gupta, J Ewald, M Srivastava, Z Osmanoglu, T Dandekar, S Schuster MYCOSES 63, 8-8, 2020 | | 2020 |
Optimal Dynamic Regimes of Pathway Regulation and Fungal Infection Processes J Ewald Friedrich-Schiller-Universität Jena, 2019 | | 2019 |
Differential transcriptional responses to Ebola and Marburg virus infection in bat and human cells (vol 6, 34589, 2016) M Hoelzer, V Kraehling, F Amman, E Barth, SH Bernhart, VAO Carmelo, ... SCIENTIFIC REPORTS 7, 2017 | | 2017 |